; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0008335 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008335
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:14337096..14337503
RNA-Seq ExpressionPI0008335
SyntenyPI0008335
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-3357.89Show/hide
Query:  EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCC
        +FS MYS GL+M PDD+M TR   + E R  SS SKRKR G   ++  I+R+A+EY N+QL  IAEWP  QRQDA  TR ++V+QL+ IPEL  +DR   
Subjt:  EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCC

Query:  MRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN
        MRI+MRNVDDMKAFL+VPD +K  YC++ILQ+N
Subjt:  MRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN

KAA0038320.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-3358.91Show/hide
Query:  MYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIM
        MYSQGL+M PD+++GTR   + EGR  SS SK KR GQ  ++  + R+A+EY N+QL  IAEWP  QRQDA  T  +VVRQL+ IP+L  +DR C M I+
Subjt:  MYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIM

Query:  MRNVDDMKAFLDVPDELKLDYCTVILQDN
        MRNVDDMKAFLDVPD +K  YC +ILQ+N
Subjt:  MRNVDDMKAFLDVPDELKLDYCTVILQDN

KAA0041444.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-3559.7Show/hide
Query:  MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVC
        M+F  MY+QGL+M  DD+MGTR  W+ E R  SS SKRKR G + ++  IIR+ +EY N+QL  IAEWP  QRQDA  TR +VVRQL+ IPEL  +DR  
Subjt:  MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVC

Query:  CMRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN
         MRI+MRNVDDMKAFLDVP+ +K  YC++ILQ+N
Subjt:  CMRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-3358.65Show/hide
Query:  EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCC
        +F  MYS GL+M PDD+M TR   + E R  SS SKRKR G   ++  I+R+AMEY N+QL  IAEWP  QRQDA  TR ++VRQL+ IPEL  +DR   
Subjt:  EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCC

Query:  MRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN
        MRI+MRNVDDMKAFL+VPD +K  YC++ILQ+N
Subjt:  MRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-4066.67Show/hide
Query:  MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVC
        ME  MMYSQG+DML DDIMGTRP    EGR  SS SKRK+ GQ  ET +IIR+ ME++ND+LKAI EW   QRQDA    ++VVRQLQ IPEL++ DRV 
Subjt:  MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVC

Query:  CMRIMMRNVDDMKAFLDVPDELKLDYCTVILQDNA
         M+I+M NVDDMKAFLD+ DELKLDYCT+I QDNA
Subjt:  CMRIMMRNVDDMKAFLDVPDELKLDYCTVILQDNA

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein7.3e-3457.89Show/hide
Query:  EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCC
        +FS MYS GL+M PDD+M TR   + E R  SS SKRKR G   ++  I+R+A+EY N+QL  IAEWP  QRQDA  TR ++V+QL+ IPEL  +DR   
Subjt:  EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCC

Query:  MRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN
        MRI+MRNVDDMKAFL+VPD +K  YC++ILQ+N
Subjt:  MRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN

A0A5A7T4M9 Retrotransposon protein9.5e-3458.91Show/hide
Query:  MYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIM
        MYSQGL+M PD+++GTR   + EGR  SS SK KR GQ  ++  + R+A+EY N+QL  IAEWP  QRQDA  T  +VVRQL+ IP+L  +DR C M I+
Subjt:  MYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIM

Query:  MRNVDDMKAFLDVPDELKLDYCTVILQDN
        MRNVDDMKAFLDVPD +K  YC +ILQ+N
Subjt:  MRNVDDMKAFLDVPDELKLDYCTVILQDN

A0A5A7TDD6 Retrotransposon protein5.9e-3659.7Show/hide
Query:  MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVC
        M+F  MY+QGL+M  DD+MGTR  W+ E R  SS SKRKR G + ++  IIR+ +EY N+QL  IAEWP  QRQDA  TR +VVRQL+ IPEL  +DR  
Subjt:  MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVC

Query:  CMRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN
         MRI+MRNVDDMKAFLDVP+ +K  YC++ILQ+N
Subjt:  CMRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN

A0A5A7TYQ6 Retrotransposon protein9.5e-3458.65Show/hide
Query:  EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCC
        +F  MYS GL+M PDD+M TR   + E R  SS SKRKR G   ++  I+R+AMEY N+QL  IAEWP  QRQDA  TR ++VRQL+ IPEL  +DR   
Subjt:  EFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCC

Query:  MRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN
        MRI+MRNVDDMKAFL+VPD +K  YC++ILQ+N
Subjt:  MRIMMRNVDDMKAFLDVPDELKLDYCTVILQDN

A0A5A7V469 Retrotransposon protein2.3e-4066.67Show/hide
Query:  MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVC
        ME  MMYSQG+DML DDIMGTRP    EGR  SS SKRK+ GQ  ET +IIR+ ME++ND+LKAI EW   QRQDA    ++VVRQLQ IPEL++ DRV 
Subjt:  MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVC

Query:  CMRIMMRNVDDMKAFLDVPDELKLDYCTVILQDNA
         M+I+M NVDDMKAFLD+ DELKLDYCT+I QDNA
Subjt:  CMRIMMRNVDDMKAFLDVPDELKLDYCTVILQDNA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTCCATGATGTACAGTCAGGGACTGGACATGTTACCTGACGACATAATGGGCACACGACCTGGTTGGTTGTTTGAGGGTAGGGCTGATTCAAGCAGTTCGAA
GAGGAAACGGAGAGGGCAGACGTTTGAGACGGCGAAAATTATTCGTAGTGCCATGGAATATGCGAATGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGCC
AAGATGCATGCTTGACACGTATGAAAGTCGTTAGACAACTGCAGGGAATCCCAGAGCTGAATAAACTAGATAGGGTTTGTTGTATGCGTATAATGATGCGCAATGTGGAT
GACATGAAAGCATTTCTCGACGTCCCGGACGAGCTTAAATTGGATTACTGTACGGTCATTCTCCAAGATAACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTTCCATGATGTACAGTCAGGGACTGGACATGTTACCTGACGACATAATGGGCACACGACCTGGTTGGTTGTTTGAGGGTAGGGCTGATTCAAGCAGTTCGAA
GAGGAAACGGAGAGGGCAGACGTTTGAGACGGCGAAAATTATTCGTAGTGCCATGGAATATGCGAATGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGCC
AAGATGCATGCTTGACACGTATGAAAGTCGTTAGACAACTGCAGGGAATCCCAGAGCTGAATAAACTAGATAGGGTTTGTTGTATGCGTATAATGATGCGCAATGTGGAT
GACATGAAAGCATTTCTCGACGTCCCGGACGAGCTTAAATTGGATTACTGTACGGTCATTCTCCAAGATAACGCTTGA
Protein sequenceShow/hide protein sequence
MEFSMMYSQGLDMLPDDIMGTRPGWLFEGRADSSSSKRKRRGQTFETAKIIRSAMEYANDQLKAIAEWPKEQRQDACLTRMKVVRQLQGIPELNKLDRVCCMRIMMRNVD
DMKAFLDVPDELKLDYCTVILQDNA