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PI0008358 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008358
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:14709014..14709220
RNA-Seq ExpressionPI0008358
SyntenyPI0008358
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051496.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.9e-1776.47Show/hide
Query:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ
        M ++TVEA MA+ME KIN LMK VEER+HEI TLREQM TRE +ESSQT +VKA+DKGKNVVQENQPQ
Subjt:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

KAA0054154.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.4e-1777.94Show/hide
Query:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ
        M ++T EA M EME KIN LMKAVEER+HEI  LREQM+TRE IESSQT VVKA+DKGKNVVQENQPQ
Subjt:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

KAA0054593.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-1779.41Show/hide
Query:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ
        M ++TVEA MAEME KIN LMKAVEER+HEI  LREQM+TRE  ESSQT VVKA+DKGKNVVQENQPQ
Subjt:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

KAA0061331.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.9e-1776.47Show/hide
Query:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ
        M N+T EA MAEME K+N LMK VEER+HEI TLREQMQTRE  ESSQT VVKA+DKGKN VQ+NQPQ
Subjt:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

KAA0065983.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.8e-1879.41Show/hide
Query:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ
        MT++T EA MAEME KIN LMK VEER+HEI  LREQMQTRE +ESSQT VVKA+DKGKNVVQENQPQ
Subjt:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

TrEMBL top hitse value%identityAlignment
A0A5A7UBC8 Retrotransposon gag protein2.4e-1776.47Show/hide
Query:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ
        M ++TVEA MA+ME KIN LMK VEER+HEI TLREQM TRE +ESSQT +VKA+DKGKNVVQENQPQ
Subjt:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

A0A5A7UF60 Ty3-gypsy retrotransposon protein1.4e-1779.41Show/hide
Query:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ
        M ++TVEA MAEME KIN LMKAVEER+HEI  LREQM+TRE  ESSQT VVKA+DKGKNVVQENQPQ
Subjt:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

A0A5A7UG56 Ty3-gypsy retrotransposon protein3.1e-1777.94Show/hide
Query:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ
        M ++T EA M EME KIN LMKAVEER+HEI  LREQM+TRE IESSQT VVKA+DKGKNVVQENQPQ
Subjt:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

A0A5A7V6H5 Ty3-gypsy retrotransposon protein2.4e-1776.47Show/hide
Query:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ
        M N+T EA MAEME K+N LMK VEER+HEI TLREQMQTRE  ESSQT VVKA+DKGKN VQ+NQPQ
Subjt:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

A0A5A7VCU1 Ty3-gypsy retrotransposon protein2.8e-1879.41Show/hide
Query:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ
        MT++T EA MAEME KIN LMK VEER+HEI  LREQMQTRE +ESSQT VVKA+DKGKNVVQENQPQ
Subjt:  MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAATGTAACAGTCGAGGCCACCATGGCGGAGATGGAGACGAAAATTAATCTCTTGATGAAAGCTGTTGAGGAACGAAACCATGAAATTGCAACTTTGAGAGAGCA
AATGCAAACTCGTGAAGCTATTGAGTCGAGTCAAACTCTTGTTGTCAAAGCTAGTGACAAAGGGAAGAATGTGGTGCAAGAAAATCAACCACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAATGTAACAGTCGAGGCCACCATGGCGGAGATGGAGACGAAAATTAATCTCTTGATGAAAGCTGTTGAGGAACGAAACCATGAAATTGCAACTTTGAGAGAGCA
AATGCAAACTCGTGAAGCTATTGAGTCGAGTCAAACTCTTGTTGTCAAAGCTAGTGACAAAGGGAAGAATGTGGTGCAAGAAAATCAACCACAATAA
Protein sequenceShow/hide protein sequence
MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ