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PI0008396 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008396
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr11:7379507..7380146
RNA-Seq ExpressionPI0008396
SyntenyPI0008396
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]1.0e-6187.94Show/hide
Query:  LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGP
        L+A+R VREAYDRW+KAN+KARVYI ASM+DVLAKK++S+A AK IMDSL EMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDM+MHFNIAEVNGGP
Subjt:  LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGP

Query:  IDEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL
        IDEANQVS ILQSLPKSFVPFQTNA LNKIEF LTTLLNEL
Subjt:  IDEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

KAA0042320.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-5783.69Show/hide
Query:  LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGP
        L+A+R  +EAYDRWIKANEKARVYI ASMSDVLAKK+ESLA  KEIMDSL  +FGQP WSLRHEAIK+IYTKR KEGTSVREHVL+M+MHFNIAEVNGG 
Subjt:  LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGP

Query:  IDEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL
        IDEANQVS IL+SLPKSF+PFQTNA LNKIEF LTTLLNEL
Subjt:  IDEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

KAA0048103.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-5783.57Show/hide
Query:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI
        +A+R  REAYDRWIKANEKARVYI ASMSDVLAKK+ESLA AKEIMDSL  MFGQP WSLRH+AIK+IYTKRMKEGTS+REHVL M++HFNIAEVNGG I
Subjt:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI

Query:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL
        DEANQVS IL+SLPKSF+PFQTN  LNKIEF LTTLLNEL
Subjt:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

XP_038882326.1 uncharacterized protein LOC120073576 [Benincasa hispida]4.6e-5782.14Show/hide
Query:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI
        +A+R +REAYDRWIKANEKARVYI A+MSDVLAKK+ESLA  KEI+DSL EMFGQPSWSLRHEAIKHIYTK MKEGTSVREH+LDM+M+FNIA+VNG PI
Subjt:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI

Query:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL
        DEANQVS ILQ +PKSF+PF+TNA LNKIEF  TTLLNEL
Subjt:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

XP_038891685.1 uncharacterized protein LOC120081079 [Benincasa hispida]1.1e-5885.71Show/hide
Query:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI
        +A+R VREAYDRW+KANEKA VYI ASMSDVLAKK+ESLA AKEI+DSL EMFGQ SWSLRHEAIKHIYTKRMKEGTSVREHVLDM+M+FNIA+VNGGPI
Subjt:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI

Query:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL
        DEANQVS ILQSLPKSF+PF+TN  LNKIEF LTTLLNEL
Subjt:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

TrEMBL top hitse value%identityAlignment
A0A5A7TWX1 Gag/pol protein3.8e-5783.57Show/hide
Query:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI
        +A+R  REAYDRWIKANEKARVYI ASMSDVLAKK+ESLA AKEIMDSL  MFGQP WSLRH+AIK+IYTKRMKEGTS+REHVL M++HFNIAEVNGG I
Subjt:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI

Query:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL
        DEANQVS IL+SLPKSF+PFQTN  LNKIEF LTTLLNEL
Subjt:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

A0A5D3BVA0 Gag/pol protein3.2e-5683.57Show/hide
Query:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI
        + +R  REAYDRWIKANEKARVYI ASM DVLAKK+ESLA AKEIMDSL  +FGQP WSLRHEAIK+IYTKRMKEGTSVREHVLD +MHFNIAEVNGG I
Subjt:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI

Query:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL
        D ANQVS IL+SLPKSF+PFQTNA LNKIEF LTTLLNEL
Subjt:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

A0A5D3CWX9 Gag/pol protein3.8e-5783.69Show/hide
Query:  LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGP
        L+A+R  +EAYDRWIKANEKARVYI ASMSDVLAKK+ESLA  KEIMDSL  +FGQP WSLRHEAIK+IYTKR KEGTSVREHVL+M+MHFNIAEVNGG 
Subjt:  LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGP

Query:  IDEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL
        IDEANQVS IL+SLPKSF+PFQTNA LNKIEF LTTLLNEL
Subjt:  IDEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

A0A5D3DL59 Gag/pol protein6.4e-5782.86Show/hide
Query:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI
        +A+R  R+AYDRWIKANEKARVYI ASMSDVLAKK+ESLA AKEIM+SL  MFGQP WSLRHEAIK+IYTKRMKEGTS+REHVLDM++HFNI EVNGG I
Subjt:  DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPI

Query:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL
        DEANQVS IL+SLPKSF+PFQ NA LNKIEF LTTLLNEL
Subjt:  DEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

E2GK51 Gag/pol protein (Fragment)5.1e-6287.94Show/hide
Query:  LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGP
        L+A+R VREAYDRW+KAN+KARVYI ASM+DVLAKK++S+A AK IMDSL EMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDM+MHFNIAEVNGGP
Subjt:  LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGP

Query:  IDEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL
        IDEANQVS ILQSLPKSFVPFQTNA LNKIEF LTTLLNEL
Subjt:  IDEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGATGCTAGCCGAAATGTTCGGGAAGCATATGATCGATGGATTAAGGCCAATGAAAAGGCTCGTGTCTATATTCCTGCCAGCATGTCTGATGTTTTGGCAAAGAA
ATATGAATCCTTAGCTATCGCTAAAGAGATTATGGATTCATTGATGGAAATGTTTGGTCAGCCTTCATGGTCCCTCAGACACGAAGCAATTAAGCATATTTACACTAAGC
GAATGAAAGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATAATGCACTTCAATATCGCTGAGGTAAATGGCGGTCCTATCGATGAGGCAAATCAAGTGAGCTCT
ATTTTACAATCTCTTCCGAAGAGTTTTGTACCATTTCAGACGAACGCGTTTCTGAATAAAATAGAATTCACTTTGACCACCCTTCTGAATGAGCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGATGCTAGCCGAAATGTTCGGGAAGCATATGATCGATGGATTAAGGCCAATGAAAAGGCTCGTGTCTATATTCCTGCCAGCATGTCTGATGTTTTGGCAAAGAA
ATATGAATCCTTAGCTATCGCTAAAGAGATTATGGATTCATTGATGGAAATGTTTGGTCAGCCTTCATGGTCCCTCAGACACGAAGCAATTAAGCATATTTACACTAAGC
GAATGAAAGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATAATGCACTTCAATATCGCTGAGGTAAATGGCGGTCCTATCGATGAGGCAAATCAAGTGAGCTCT
ATTTTACAATCTCTTCCGAAGAGTTTTGTACCATTTCAGACGAACGCGTTTCTGAATAAAATAGAATTCACTTTGACCACCCTTCTGAATGAGCTCTAG
Protein sequenceShow/hide protein sequence
MLDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSS
ILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL