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PI0008404 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008404
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:9159645..9160801
RNA-Seq ExpressionPI0008404
SyntenyPI0008404
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-2146.96Show/hide
Query:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW
        MAKN Q FG+ AS ++ S +KEV+EL SQ+ N+TTL+T   +    +V  C+VCG++GH +DKCP+V +E+N +    ++YDP++N YN GW+D+P LRW
Subjt:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW

Query:  GNQDQQETKKALQSN
        GN +Q+ T+    S+
Subjt:  GNQDQQETKKALQSN

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.0e-2351.38Show/hide
Query:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW
        MA+N QNFG+ AS +D S +KEV+EL SQ+ N+TTL+T   +    +V  C VCG++G+ +DKCPKV ++VN +    R YDPH N YN+GW+D+P+LRW
Subjt:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW

Query:  GNQDQQETK
        GN +Q+ T+
Subjt:  GNQDQQETK

KAA0061315.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-2150.93Show/hide
Query:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW
        MA+N Q+FG+ AS +D S  KEV+EL SQ+ N+TTL+T        +V  C VCG++GH +DKCP+V ++VN +    R YDPH N YN GW+D+P+LRW
Subjt:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW

Query:  GNQDQQET
        GN +Q+ T
Subjt:  GNQDQQET

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-2251.82Show/hide
Query:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNL-TTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLR
        MAKNFQ+FG+ AS  D S +KEV+EL SQ+ N+ TTL+T   +    +V  C VCG++GHL++KCP+V ++VN +    R YDPH+N YN GW+D+P+LR
Subjt:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNL-TTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLR

Query:  WGNQDQQETK
        WGN +Q+ T+
Subjt:  WGNQDQQETK

TYK14267.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-2150.93Show/hide
Query:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW
        MA+N Q+FG+ AS +D S  KEV+EL SQ+ N+TTL+T        +V  C VCG++GH +DKCP+V ++VN +    R YDPH N YN GW+D+P+LRW
Subjt:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW

Query:  GNQDQQET
        GN +Q+ T
Subjt:  GNQDQQET

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein3.9e-2351.38Show/hide
Query:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW
        MA+N QNFG+ AS +D S +KEV+EL SQ+ N+TTL+T   +    +V  C VCG++G+ +DKCPKV ++VN +    R YDPH N YN+GW+D+P+LRW
Subjt:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW

Query:  GNQDQQETK
        GN +Q+ T+
Subjt:  GNQDQQETK

A0A5A7SRF5 Retrotransposon gag protein5.6e-2246.96Show/hide
Query:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW
        MAKN Q FG+ AS ++ S +KEV+EL SQ+ N+TTL+T   +    +V  C+VCG++GH +DKCP+V +E+N +    ++YDP++N YN GW+D+P LRW
Subjt:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW

Query:  GNQDQQETKKALQSN
        GN +Q+ T+    S+
Subjt:  GNQDQQETKKALQSN

A0A5A7V668 Retrotransposon gag protein7.3e-2250.93Show/hide
Query:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW
        MA+N Q+FG+ AS +D S  KEV+EL SQ+ N+TTL+T        +V  C VCG++GH +DKCP+V ++VN +    R YDPH N YN GW+D+P+LRW
Subjt:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW

Query:  GNQDQQET
        GN +Q+ T
Subjt:  GNQDQQET

A0A5A7VQ60 Retrotransposon gag protein1.1e-2251.82Show/hide
Query:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNL-TTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLR
        MAKNFQ+FG+ AS  D S +KEV+EL SQ+ N+ TTL+T   +    +V  C VCG++GHL++KCP+V ++VN +    R YDPH+N YN GW+D+P+LR
Subjt:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNL-TTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLR

Query:  WGNQDQQETK
        WGN +Q+ T+
Subjt:  WGNQDQQETK

A0A5D3CQR9 Retrotransposon gag protein7.3e-2250.93Show/hide
Query:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW
        MA+N Q+FG+ AS +D S  KEV+EL SQ+ N+TTL+T        +V  C VCG++GH +DKCP+V ++VN +    R YDPH N YN GW+D+P+LRW
Subjt:  MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRW

Query:  GNQDQQET
        GN +Q+ T
Subjt:  GNQDQQET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAAAATTTCCAAAACTTTGGGAGTGGAGCATCCAACGTGGATTTTTCATCTTCAAAAGAGGTAAATGAACTTATATCTCAATTATCTAATTTGACTACTCTTGT
GACACAAATGGCAAAAAGAGCAAATCAACAAGTCATGGTTTGCAAAGTTTGTGGAGTGCTTGGGCACCTGTCTGACAAATGCCCCAAGGTCACAAAGGAAGTCAACGCAA
TTGGAGGCTTTAGTAGAGAGTATGATCCCCACAATAACATGTACAACGTTGGATGGAAAGATCATCCTCACTTGAGATGGGGAAATCAAGACCAACAAGAGACCAAGAAG
GCTCTCCAGTCCAACTTCTTCCTCTTCAGCGTCGTGGTGCCAAAAGATAGTAGCTACAATAATCAAGCAGAACTGCAGTGCCAATCTCAGTGTTGCTGCGCCCAAGTCGA
CAAGCCCAACGTCGTGGCGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAAAATTTCCAAAACTTTGGGAGTGGAGCATCCAACGTGGATTTTTCATCTTCAAAAGAGGTAAATGAACTTATATCTCAATTATCTAATTTGACTACTCTTGT
GACACAAATGGCAAAAAGAGCAAATCAACAAGTCATGGTTTGCAAAGTTTGTGGAGTGCTTGGGCACCTGTCTGACAAATGCCCCAAGGTCACAAAGGAAGTCAACGCAA
TTGGAGGCTTTAGTAGAGAGTATGATCCCCACAATAACATGTACAACGTTGGATGGAAAGATCATCCTCACTTGAGATGGGGAAATCAAGACCAACAAGAGACCAAGAAG
GCTCTCCAGTCCAACTTCTTCCTCTTCAGCGTCGTGGTGCCAAAAGATAGTAGCTACAATAATCAAGCAGAACTGCAGTGCCAATCTCAGTGTTGCTGCGCCCAAGTCGA
CAAGCCCAACGTCGTGGCGCTATGA
Protein sequenceShow/hide protein sequence
MAKNFQNFGSGASNVDFSSSKEVNELISQLSNLTTLVTQMAKRANQQVMVCKVCGVLGHLSDKCPKVTKEVNAIGGFSREYDPHNNMYNVGWKDHPHLRWGNQDQQETKK
ALQSNFFLFSVVVPKDSSYNNQAELQCQSQCCCAQVDKPNVVAL