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PI0008470 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008470
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr10:8447229..8448016
RNA-Seq ExpressionPI0008470
SyntenyPI0008470
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-5883.1Show/hide
Query:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS
        PLPSLDAAVQ+ILFEEKRLGIVSSL SDVALATTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+G+IL+NCPTRPPRPPGH HK KFS K GS S
Subjt:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS

Query:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS
        VVAAAT SDIT P + QL DLHDLLKQVISS ST LAVTPG+
Subjt:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.6e-5981.69Show/hide
Query:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS
        PLPSLDAAVQ+ILFEEKRLGIVSSLPSDVALATTH R  NE++FCKNCKLHGHKFANCPTIECRYC+K+G+IL+NCPTRPPRPP H HK KFS K GS S
Subjt:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS

Query:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS
        VVAAAT SDIT P + QL DLHDLLKQV+SS ST LAVTPG+
Subjt:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-5883.1Show/hide
Query:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS
        PLPSLDAAVQ+ILFEEKRLGIVSSL SDVALATTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+G+IL+NCPTRPPRPPGH HK KFS K GS S
Subjt:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS

Query:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS
        VVAAAT SDIT P + QL DLHDLLKQVISS ST LAVTPG+
Subjt:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]2.4e-6882.5Show/hide
Query:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS
        PLPSLDAAVQ+ILFEEKRLGIVSSL SDVALATTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+G+IL+NCPTRPPRPPGH HK KFS K GS S
Subjt:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS

Query:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGSGSADGASDWYGTEGGRII
        VVAAAT SDIT P + QL DLHDLLKQVISS ST LAVTPGSG +DG SDW+GTEGG II
Subjt:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGSGSADGASDWYGTEGGRII

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]1.4e-7184.38Show/hide
Query:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS
        PLPSLDAA+Q+ILFEE RLGIVSSLPSDVALATTH RS NES FCKNCKLHGHKFANCPTIECRYCHK+G+IL+NCPTRPPRPPG P+K K S K  SP 
Subjt:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS

Query:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGSGSADGASDWYGTEGGRII
        +VAAATPSDIT P NFQLNDLHDLLKQVISSNST LAVTPGSG ++GASDWYGTEGG II
Subjt:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGSGSADGASDWYGTEGGRII

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882001.2e-6882.5Show/hide
Query:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS
        PLPSLDAAVQ+ILFEEKRLGIVSSL SDVALATTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+G+IL+NCPTRPPRPPGH HK KFS K GS S
Subjt:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS

Query:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGSGSADGASDWYGTEGGRII
        VVAAAT SDIT P + QL DLHDLLKQVISS ST LAVTPGSG +DG SDW+GTEGG II
Subjt:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGSGSADGASDWYGTEGGRII

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-948.3e-5983.1Show/hide
Query:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS
        PLPSLDAAVQ+ILFEEKRLGIVSSL SDVALATTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+G+IL+NCPTRPPRPPGH HK KFS K GS S
Subjt:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS

Query:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS
        VVAAAT SDIT P + QL DLHDLLKQVISS ST LAVTPG+
Subjt:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS

A0A5A7TXR0 Putative mitochondrial protein1.3e-5981.69Show/hide
Query:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS
        PLPSLDAAVQ+ILFEEKRLGIVSSLPSDVALATTH R  NE++FCKNCKLHGHKFANCPTIECRYC+K+G+IL+NCPTRPPRPP H HK KFS K GS S
Subjt:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS

Query:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS
        VVAAAT SDIT P + QL DLHDLLKQV+SS ST LAVTPG+
Subjt:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-948.3e-5983.1Show/hide
Query:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS
        PLPSLDAAVQ+ILFEEKRLGIVSSL SDVALATTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+G+IL+NCPTRPPRPPGH HK KFS K GS S
Subjt:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS

Query:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS
        VVAAAT SDIT P + QL DLHDLLKQVISS ST LAVTPG+
Subjt:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-948.3e-5983.1Show/hide
Query:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS
        PLPSLDAAVQ+ILFEEKRLGIVSSL SDVALATTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+G+IL+NCPTRPPRPPGH HK KFS K GS S
Subjt:  PLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGSPS

Query:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS
        VVAAAT SDIT P + QL DLHDLLKQVISS ST LAVTPG+
Subjt:  VVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCGTTTGCGTTGCCCTGTTACACCGCAACCCCTTTACCGTCTCTCGACGCTGCTGTTCAAAAGATTTTATTTGAGGAAAAACGTCTTGGCATTGTCTCCTCTCT
GCCCTCTGATGTTGCTCTAGCCACCACTCATCCTCGTTCCACCAATGAGTCTACCTTCTGCAAAAACTGTAAACTTCATGGTCATAAGTTTGCTAATTGTCCCACCATTG
AGTGCAGGTATTGTCACAAGAAAGGATACATCTTGGAAAACTGTCCGACTCGCCCACCTCGCCCTCCTGGTCATCCACACAAATCCAAGTTCTCACCGAAGACGGGTTCT
CCATCTGTTGTGGCTGCCGCCACTCCATCTGACATCACCATACCCCCGAACTTTCAGTTAAATGATCTTCATGACTTACTAAAACAGGTGATCTCTTCCAACTCTACTAC
CCTTGCTGTCACCCCAGGTTCAGGATCCGCAGACGGGGCAAGTGATTGGTACGGGACGGAAGGTGGGAGGATTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCGTTTGCGTTGCCCTGTTACACCGCAACCCCTTTACCGTCTCTCGACGCTGCTGTTCAAAAGATTTTATTTGAGGAAAAACGTCTTGGCATTGTCTCCTCTCT
GCCCTCTGATGTTGCTCTAGCCACCACTCATCCTCGTTCCACCAATGAGTCTACCTTCTGCAAAAACTGTAAACTTCATGGTCATAAGTTTGCTAATTGTCCCACCATTG
AGTGCAGGTATTGTCACAAGAAAGGATACATCTTGGAAAACTGTCCGACTCGCCCACCTCGCCCTCCTGGTCATCCACACAAATCCAAGTTCTCACCGAAGACGGGTTCT
CCATCTGTTGTGGCTGCCGCCACTCCATCTGACATCACCATACCCCCGAACTTTCAGTTAAATGATCTTCATGACTTACTAAAACAGGTGATCTCTTCCAACTCTACTAC
CCTTGCTGTCACCCCAGGTTCAGGATCCGCAGACGGGGCAAGTGATTGGTACGGGACGGAAGGTGGGAGGATTATTTGA
Protein sequenceShow/hide protein sequence
MNPFALPCYTATPLPSLDAAVQKILFEEKRLGIVSSLPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTIECRYCHKKGYILENCPTRPPRPPGHPHKSKFSPKTGS
PSVVAAATPSDITIPPNFQLNDLHDLLKQVISSNSTTLAVTPGSGSADGASDWYGTEGGRII