CuGenDBv2

Gene ID	PI0008505
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	PHD finger protein MALE STERILITY 1
Genome location	chr10:9675098..9675472
RNA-Seq Expression	PI0008505
Synteny	PI0008505
Gene Ontology terms	GO:0009846 - pollen germination (biological process) GO:0010208 - pollen wall assembly (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0048655 - anther wall tapetum morphogenesis (biological process) GO:0055046 - microgametogenesis (biological process) GO:0071367 - cellular response to brassinosteroid stimulus (biological process) GO:0005634 - nucleus (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032172.1 PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa]

3.9e-52

91.23

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Query:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ
        TDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGEC GEGFRCWSFRLQVQRQPP HVVLFV+EEAVE+  V +RQCKQCQ
Subjt:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ

Query:  YVGKVSKAN-MNLL
        YVGKVSKAN MNLL
Subjt:  YVGKVSKAN-MNLL

XP_004140423.1 PHD finger protein MALE STERILITY 1 [Cucumis sativus]

6.8e-49

93.2

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Query:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ
        TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGEC  EGFRCWSFRLQVQRQPPFHVVLFV+EEAVE   V ARQCKQCQ
Subjt:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ

Query:  YVG
        YVG
Subjt:  YVG

XP_008456986.1 PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo]

4.4e-48

91.26

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Query:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ
        TDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGEC GEGFRCWSFRLQVQRQPP HVVLFV+EEAVE+  V +RQCKQCQ
Subjt:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ

Query:  YVG
        YVG
Subjt:  YVG

XP_022156066.1 PHD finger protein MALE STERILITY 1 [Momordica charantia]

7.8e-37

74.29

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Query:  MTDVIGKKRRRG-GGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQ
        M + IG+KRRRG GGGGE+VFRFKSFGENG+P E VGRFRENV ALLGFG+WESG+C G G + WSF+LQVQRQPPFH+V+FVVEE VEAA    R CK 
Subjt:  MTDVIGKKRRRG-GGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

XP_038891568.1 PHD finger protein MALE STERILITY 1 [Benincasa hispida]

2.0e-45

89.52

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Query:  MTDVIGKKRRR-GGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQ
        MT+V GKKRRR GGGGGERVFRFKSFGENGHPAELVG FRENVEALLGFG+ E GEC GEGFRCWSFRLQVQRQPPFHVVLFVVEEA EAA V ARQCKQ
Subjt:  MTDVIGKKRRR-GGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPP3 Uncharacterized protein

2.4e-52

91.82

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Query:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ
        TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGEC  EGFRCWSFRLQVQRQPPFHVVLFV+EEAVE   V ARQCKQCQ
Subjt:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ

Query:  YVGKVSKANM
        YVGK+SKAN+
Subjt:  YVGKVSKANM

A0A1S3C4G3 PHD finger protein MALE STERILITY 1

2.1e-48

91.26

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Query:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ
        TDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGEC GEGFRCWSFRLQVQRQPP HVVLFV+EEAVE+  V +RQCKQCQ
Subjt:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ

Query:  YVG
        YVG
Subjt:  YVG

A0A5D3CR48 PHD finger protein MALE STERILITY 1

1.9e-52

91.23

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Query:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ
        TDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGEC GEGFRCWSFRLQVQRQPP HVVLFV+EEAVE+  V +RQCKQCQ
Subjt:  TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQ

Query:  YVGKVSKAN-MNLL
        YVGKVSKAN MNLL
Subjt:  YVGKVSKAN-MNLL

A0A6J1DTQ4 PHD finger protein MALE STERILITY 1

3.8e-37

74.29

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Query:  MTDVIGKKRRRG-GGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQ
        M + IG+KRRRG GGGGE+VFRFKSFGENG+P E VGRFRENV ALLGFG+WESG+C G G + WSF+LQVQRQPPFH+V+FVVEE VEAA    R CK 
Subjt:  MTDVIGKKRRRG-GGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

A0A6J1KWF9 PHD finger protein MALE STERILITY 1

1.9e-33

66.67

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Query:  MTDVIGKKRRRGG----------GGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAA
        M D+I  KRRRG             G+RVFRFKSFG+NGHP + +G F ENVEALLGFG WE+GEC    FRCWSFRLQVQR PPFHVVLFVVEE  EAA
Subjt:  MTDVIGKKRRRGG----------GGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAA

Query:  IVGARQCKQCQYVG
           AR CKQCQYVG
Subjt:  IVGARQCKQCQYVG

SwissProt top hits

e value

%identity

Alignment

Q67V61 PHD finger protein PERSISTENT TAPETAL CELL 1

3.3e-14

47.06

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Query:  IGKKRRRGGGGGERVFRFKSFGENGHPAELVGR--FRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQY
        +G  RRR    GE +FRF++F + G+PA   G   FR+NV  LLGF   E+G   GE  +CWSF+L++ R PP  V LFVVEE V A+    RQC  C++
Subjt:  IGKKRRRGGGGGERVFRFKSFGENGHPAELVGR--FRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQY

Query:  VG
        +G
Subjt:  VG

Q9FMS5 PHD finger protein MALE STERILITY 1

4.2e-17

50.98

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Query:  IGKKRRRGGGGGERVFRFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQP-PFHVVLFVVEEAVEAAIVGARQCKQCQY
        I KKR+R   G  RVFR K+FGE+GHPAE+    FR+N+  LL FG +ES    G     WSF+L++QR P P +V+LFVVEE +EA++    +C  CQY
Subjt:  IGKKRRRGGGGGERVFRFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQP-PFHVVLFVVEEAVEAAIVGARQCKQCQY

Query:  VG
        VG
Subjt:  VG

Arabidopsis top hits

e value

%identity

Alignment

AT5G22260.1 RING/FYVE/PHD zinc finger superfamily protein

3.0e-18

50.98

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Query:  IGKKRRRGGGGGERVFRFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQP-PFHVVLFVVEEAVEAAIVGARQCKQCQY
        I KKR+R   G  RVFR K+FGE+GHPAE+    FR+N+  LL FG +ES    G     WSF+L++QR P P +V+LFVVEE +EA++    +C  CQY
Subjt:  IGKKRRRGGGGGERVFRFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQP-PFHVVLFVVEEAVEAAIVGARQCKQCQY

Query:  VG
        VG
Subjt:  VG

Sequences

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CDS sequence

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ATGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGTGGCGGAGGGGGAGAGAGGGTGTTTAGATTCAAAAGCTTTGGGGAGAATGGACATCCGGCAGAGCTTGTGGGGAG
ATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGTCGTGGCGAGGGGTTTCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGCAGC
CACCTTTCCATGTCGTGCTGTTTGTGGTGGAGGAGGCGGTGGAGGCAGCCATCGTGGGGGCGAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCAAAAGCAAAT
ATGAATCTTTTATTGGGTTTGTCTTGGGAGAAAGGTATTTCTTAA

mRNA sequence

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Protein sequence

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MTDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVGKVSKAN
MNLLLGLSWEKGIS

PI0008505 (gene) of Melon (PI 482460) v1 genome