; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0008538 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008538
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:15629467..15631112
RNA-Seq ExpressionPI0008538
SyntenyPI0008538
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.1e-6360.42Show/hide
Query:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV
        DRNTVDAAAGG LA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNMTTLLTSFVQ               GHPNDKCP+++EE N+
Subjt:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV

Query:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGK
        ++KYDP+ NTYN GWRDNP LRWGNDNQ+  QA ++S+NQ                                     GKGKLPAQP+H NVS ISLRSGK
Subjt:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGK

Query:  TLETPS-NEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
         L+TPS  E+KVTSIP  L  KNE KEEKVET+   S+ K
Subjt:  TLETPS-NEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-6261.09Show/hide
Query:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV
        DRN VDAAA G LADKTP EARELI RMAENSQ FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ               G+PNDKCP ++E+ N+
Subjt:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV

Query:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ------------------------------------GKGKLPAQPDHVNVSAISLRSGKT
        +R+YDPHGNTYN GWRDNPNLRWGNDNQ+  QA  +S+NQ                                    GKGKLPAQPDHVNVSAISLRSGK 
Subjt:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ------------------------------------GKGKLPAQPDHVNVSAISLRSGKT

Query:  LETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        L+TP + E+KVTS    L  KN+ KEEKVET+   S+SK
Subjt:  LETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-6259.58Show/hide
Query:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV
        DRNTVDA AGG LADK PTEARELIS+MAENSQ F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ               GHPNDKCP+++E+ N+
Subjt:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV

Query:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGK
        +RKYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQ                                     GKGKL AQ ++ NVSA+SLRSGK
Subjt:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGK

Query:  TLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
         L+TP + E+K TS P  L  KNE KEEK+ET+  P +SK
Subjt:  TLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.6e-6261.04Show/hide
Query:  RNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANVI
        RNT+D AAGG LADKTPTEARELISRMAENS+ FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ               GHPNDKCP ++E+ N++
Subjt:  RNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANVI

Query:  RKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGKT
        R+YDPH NTYN+GWRDN NLRWGNDNQ+  QA S+S+NQ                                     GKGKLPAQPDH NVSAISLRSGK 
Subjt:  RKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGKT

Query:  LETP-SNEEKVTSIPNLLEDKNEKKEEKVET
        L+TP + E+K+TS P  L  KNE KEEKV++
Subjt:  LETP-SNEEKVTSIPNLLEDKNEKKEEKVET

TYK14267.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-6160.08Show/hide
Query:  NTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFV---------------QGHPNDKCPDLVEEANVIR
        NTVDAAAGG LADKTPT ARELISRMAENSQ FGN+ASELDNSL KEVSELKSQMLNMTTLLTSFV                GH NDKCP+++E+ N++R
Subjt:  NTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFV---------------QGHPNDKCPDLVEEANVIR

Query:  KYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGKTL
        +YDPHGNTYN+GWRDNPNLRWGNDNQ+   A S+S+ Q                                     GKGKL AQP H NVS ISLRSGK L
Subjt:  KYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGKTL

Query:  ETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        +TP S E+KVTS P  L  KNE KEEKVET+  PS+SK
Subjt:  ETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein1.0e-6261.09Show/hide
Query:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV
        DRN VDAAA G LADKTP EARELI RMAENSQ FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ               G+PNDKCP ++E+ N+
Subjt:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV

Query:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ------------------------------------GKGKLPAQPDHVNVSAISLRSGKT
        +R+YDPHGNTYN GWRDNPNLRWGNDNQ+  QA  +S+NQ                                    GKGKLPAQPDHVNVSAISLRSGK 
Subjt:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ------------------------------------GKGKLPAQPDHVNVSAISLRSGKT

Query:  LETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        L+TP + E+KVTS    L  KN+ KEEKVET+   S+SK
Subjt:  LETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

A0A5A7SRF5 Retrotransposon gag protein3.4e-6360.42Show/hide
Query:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV
        DRNTVDAAAGG LA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNMTTLLTSFVQ               GHPNDKCP+++EE N+
Subjt:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV

Query:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGK
        ++KYDP+ NTYN GWRDNP LRWGNDNQ+  QA ++S+NQ                                     GKGKLPAQP+H NVS ISLRSGK
Subjt:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGK

Query:  TLETPS-NEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
         L+TPS  E+KVTSIP  L  KNE KEEKVET+   S+ K
Subjt:  TLETPS-NEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

A0A5D3CB46 Retrotransposon gag protein2.2e-6261.04Show/hide
Query:  RNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANVI
        RNT+D AAGG LADKTPTEARELISRMAENS+ FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ               GHPNDKCP ++E+ N++
Subjt:  RNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANVI

Query:  RKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGKT
        R+YDPH NTYN+GWRDN NLRWGNDNQ+  QA S+S+NQ                                     GKGKLPAQPDH NVSAISLRSGK 
Subjt:  RKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGKT

Query:  LETP-SNEEKVTSIPNLLEDKNEKKEEKVET
        L+TP + E+K+TS P  L  KNE KEEKV++
Subjt:  LETP-SNEEKVTSIPNLLEDKNEKKEEKVET

A0A5D3CQR9 Retrotransposon gag protein1.1e-6160.08Show/hide
Query:  NTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFV---------------QGHPNDKCPDLVEEANVIR
        NTVDAAAGG LADKTPT ARELISRMAENSQ FGN+ASELDNSL KEVSELKSQMLNMTTLLTSFV                GH NDKCP+++E+ N++R
Subjt:  NTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFV---------------QGHPNDKCPDLVEEANVIR

Query:  KYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGKTL
        +YDPHGNTYN+GWRDNPNLRWGNDNQ+   A S+S+ Q                                     GKGKL AQP H NVS ISLRSGK L
Subjt:  KYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGKTL

Query:  ETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        +TP S E+KVTS P  L  KNE KEEKVET+  PS+SK
Subjt:  ETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

A0A5D3CRR8 Retrotransposon gag protein1.0e-6259.58Show/hide
Query:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV
        DRNTVDA AGG LADK PTEARELIS+MAENSQ F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ               GHPNDKCP+++E+ N+
Subjt:  DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ---------------GHPNDKCPDLVEEANV

Query:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGK
        +RKYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQ                                     GKGKL AQ ++ NVSA+SLRSGK
Subjt:  IRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-------------------------------------GKGKLPAQPDHVNVSAISLRSGK

Query:  TLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
         L+TP + E+K TS P  L  KNE KEEK+ET+  P +SK
Subjt:  TLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGAAATACAGTAGATGCTGCAGCAGGTGGCACTTTAGCTGATAAGACCCCTACTGAAGCAAGAGAGCTCATTTCTAGGATGGCTGAGAATTCACAGTATTTTGG
CAACAGGGCATCCGAGCTCGATAATTCATTGACAAAAGAGGTAAGTGAACTGAAATCACAGATGCTTAATATGACTACCTTATTAACCTCTTTTGTGCAAGGACATCCTA
ATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCATGGAAACACTTACAACGCCGGTTGGAGAGACAATCCTAACCTTAGATGGGGA
AACGATAACCAACGACCCGCACAAGCAACTTCTTCTTCAAACAATCAAGGAAAAGGCAAGCTTCCAGCTCAGCCTGATCACGTGAACGTAAGTGCCATCTCGCTTAGAAG
CGGTAAGACTCTGGAAACCCCTTCTAACGAAGAAAAGGTAACTTCTATCCCTAACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAAGTAGAAACAAGTACCCCAC
CATCTTCATCAAAAGAGTTAGATGAAATAGAAGAAGATATTTGTTTGAGTGAATTAAATGAAGAAAAAGAAATTGTAGGCGAATTAGAAAGCGCAGTTCGCTCCCTTGGG
TACGACAACTCTGTTCTTCAACTATACTCACCACTACGTCTACATCGCTACAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGAAATACAGTAGATGCTGCAGCAGGTGGCACTTTAGCTGATAAGACCCCTACTGAAGCAAGAGAGCTCATTTCTAGGATGGCTGAGAATTCACAGTATTTTGG
CAACAGGGCATCCGAGCTCGATAATTCATTGACAAAAGAGGTAAGTGAACTGAAATCACAGATGCTTAATATGACTACCTTATTAACCTCTTTTGTGCAAGGACATCCTA
ATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCATGGAAACACTTACAACGCCGGTTGGAGAGACAATCCTAACCTTAGATGGGGA
AACGATAACCAACGACCCGCACAAGCAACTTCTTCTTCAAACAATCAAGGAAAAGGCAAGCTTCCAGCTCAGCCTGATCACGTGAACGTAAGTGCCATCTCGCTTAGAAG
CGGTAAGACTCTGGAAACCCCTTCTAACGAAGAAAAGGTAACTTCTATCCCTAACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAAGTAGAAACAAGTACCCCAC
CATCTTCATCAAAAGAGTTAGATGAAATAGAAGAAGATATTTGTTTGAGTGAATTAAATGAAGAAAAAGAAATTGTAGGCGAATTAGAAAGCGCAGTTCGCTCCCTTGGG
TACGACAACTCTGTTCTTCAACTATACTCACCACTACGTCTACATCGCTACAGTTAA
Protein sequenceShow/hide protein sequence
MDRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWG
NDNQRPAQATSSSNNQGKGKLPAQPDHVNVSAISLRSGKTLETPSNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSKELDEIEEDICLSELNEEKEIVGELESAVRSLG
YDNSVLQLYSPLRLHRYS