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PI0008544 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008544
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:19443400..19444167
RNA-Seq ExpressionPI0008544
SyntenyPI0008544
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042232.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-2240.8Show/hide
Query:  MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHD
        MK+ F+A+ EM   +CSGFGWNDE       K+    + + + K    +  P   +  + L ++V R      DR+ S    R         F  D   D
Subjt:  MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHD

Query:  IEIPMMYSQGLDMSPDNIMGTRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN
         + P+MYSQGL+MS D++M TR ++L E + EL+  DR RLMRILMRNV+DMK FL+VPD +K  Y ++IL+EN
Subjt:  IEIPMMYSQGLDMSPDNIMGTRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN

KAA0054347.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2037.98Show/hide
Query:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQ-RLPKQAIFSLRRLVLRIWEKSC----DRSASGDIRRF-----RVECALRGFPADDG
        +K+ F AI EM  P+CSGFGWNDE K    I     +  ++ +  L  + +  L +L L   E S     DR+  G    F             F A+  
Subjt:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQ-RLPKQAIFSLRRLVLRIWEKSC----DRSASGDIRRF-----RVECALRGFPADDG

Query:  HDIEIPMMYSQGLDMSPDNIMGTRPSRLSEG--------------------------------IPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDY
         D     MYSQ L+MSPD +MGTR +R+SEG                                IPEL+  DR  LM ILMRNVNDMK FLEVPD +K  Y
Subjt:  HDIEIPMMYSQGLDMSPDNIMGTRPSRLSEG--------------------------------IPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDY

Query:  CTVILKEN
        C++IL+EN
Subjt:  CTVILKEN

KAA0067287.1 retrotransposon protein [Cucumis melo var. makuwa]3.6e-2130.74Show/hide
Query:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLT---IYLNTSIKSSYCQRLPKQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVE--CALRGFPADDGHDIEI
        +K+ F A+ +MC+P+CS FGWNDE K  +T   ++++    +S  + L  ++      L     +    R  +      R+        F AD   D + 
Subjt:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLT---IYLNTSIKSSYCQRLPKQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVE--CALRGFPADDGHDIEI

Query:  PMMYSQGLDMSPDNIMGTRPSRLSEG------------------------------------------------------------IPELSTRDRVRLMR
          MY+QGL+MSPD +MGTR +R+SEG                                                            IPEL+  DR R+MR
Subjt:  PMMYSQGLDMSPDNIMGTRPSRLSEG------------------------------------------------------------IPELSTRDRVRLMR

Query:  ILMRNVNDMKGFLEVPDELKLDYCTVILKEN
        ILMRNV+DMK FL++PD +K  YC +IL+EN
Subjt:  ILMRNVNDMKGFLEVPDELKLDYCTVILKEN

TYK05687.1 retrotransposon protein [Cucumis melo var. makuwa]7.3e-2240.74Show/hide
Query:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQRLPKQAIFSLRRLVLRIWEKSC----DRSASGDIRRF-----RVECALRGFPADDGH
        +K+ F AI EM  P+CSGFGWNDE K    I +   +   + +  P  A   L +      E S     DR+  G  + F             F AD   
Subjt:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQRLPKQAIFSLRRLVLRIWEKSC----DRSASGDIRRF-----RVECALRGFPADDGH

Query:  DIEIPMMYSQGLDMSPDNIMGTRPSRLSEG--------------IPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN
        D     MYSQGL MS D +MGTR + +SE               IPEL+  DR  LMRILMRNV+DMK FLEVPD +K  YC+ IL+EN
Subjt:  DIEIPMMYSQGLDMSPDNIMGTRPSRLSEG--------------IPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN

TYK14256.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-2341.38Show/hide
Query:  MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHD
        MK+ F+A+ EM   +CSGFGWNDE       K+    + + + K    +  P   +  + L ++V R      DR  S    R         F  D   D
Subjt:  MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHD

Query:  IEIPMMYSQGLDMSPDNIMGTRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN
         + P+MYSQGL+MS D++M TR ++L E + EL+  DR RLMRILMRNV+DMK FL+VPD +K  YC++IL+EN
Subjt:  IEIPMMYSQGLDMSPDNIMGTRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN

TrEMBL top hitse value%identityAlignment
A0A5A7TFM7 Retrotransposon protein1.2e-2240.8Show/hide
Query:  MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHD
        MK+ F+A+ EM   +CSGFGWNDE       K+    + + + K    +  P   +  + L ++V R      DR+ S    R         F  D   D
Subjt:  MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHD

Query:  IEIPMMYSQGLDMSPDNIMGTRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN
         + P+MYSQGL+MS D++M TR ++L E + EL+  DR RLMRILMRNV+DMK FL+VPD +K  Y ++IL+EN
Subjt:  IEIPMMYSQGLDMSPDNIMGTRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN

A0A5A7UIE9 Retrotransposon protein5.1e-2137.98Show/hide
Query:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQ-RLPKQAIFSLRRLVLRIWEKSC----DRSASGDIRRF-----RVECALRGFPADDG
        +K+ F AI EM  P+CSGFGWNDE K    I     +  ++ +  L  + +  L +L L   E S     DR+  G    F             F A+  
Subjt:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQ-RLPKQAIFSLRRLVLRIWEKSC----DRSASGDIRRF-----RVECALRGFPADDG

Query:  HDIEIPMMYSQGLDMSPDNIMGTRPSRLSEG--------------------------------IPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDY
         D     MYSQ L+MSPD +MGTR +R+SEG                                IPEL+  DR  LM ILMRNVNDMK FLEVPD +K  Y
Subjt:  HDIEIPMMYSQGLDMSPDNIMGTRPSRLSEG--------------------------------IPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDY

Query:  CTVILKEN
        C++IL+EN
Subjt:  CTVILKEN

A0A5A7VJD7 Retrotransposon protein1.8e-2130.74Show/hide
Query:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLT---IYLNTSIKSSYCQRLPKQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVE--CALRGFPADDGHDIEI
        +K+ F A+ +MC+P+CS FGWNDE K  +T   ++++    +S  + L  ++      L     +    R  +      R+        F AD   D + 
Subjt:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLT---IYLNTSIKSSYCQRLPKQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVE--CALRGFPADDGHDIEI

Query:  PMMYSQGLDMSPDNIMGTRPSRLSEG------------------------------------------------------------IPELSTRDRVRLMR
          MY+QGL+MSPD +MGTR +R+SEG                                                            IPEL+  DR R+MR
Subjt:  PMMYSQGLDMSPDNIMGTRPSRLSEG------------------------------------------------------------IPELSTRDRVRLMR

Query:  ILMRNVNDMKGFLEVPDELKLDYCTVILKEN
        ILMRNV+DMK FL++PD +K  YC +IL+EN
Subjt:  ILMRNVNDMKGFLEVPDELKLDYCTVILKEN

A0A5D3C1J4 Retrotransposon protein3.5e-2240.74Show/hide
Query:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQRLPKQAIFSLRRLVLRIWEKSC----DRSASGDIRRF-----RVECALRGFPADDGH
        +K+ F AI EM  P+CSGFGWNDE K    I +   +   + +  P  A   L +      E S     DR+  G  + F             F AD   
Subjt:  MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQRLPKQAIFSLRRLVLRIWEKSC----DRSASGDIRRF-----RVECALRGFPADDGH

Query:  DIEIPMMYSQGLDMSPDNIMGTRPSRLSEG--------------IPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN
        D     MYSQGL MS D +MGTR + +SE               IPEL+  DR  LMRILMRNV+DMK FLEVPD +K  YC+ IL+EN
Subjt:  DIEIPMMYSQGLDMSPDNIMGTRPSRLSEG--------------IPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN

A0A5D3CV43 Retrotransposon protein1.4e-2341.38Show/hide
Query:  MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHD
        MK+ F+A+ EM   +CSGFGWNDE       K+    + + + K    +  P   +  + L ++V R      DR  S    R         F  D   D
Subjt:  MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHD

Query:  IEIPMMYSQGLDMSPDNIMGTRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN
         + P+MYSQGL+MS D++M TR ++L E + EL+  DR RLMRILMRNV+DMK FL+VPD +K  YC++IL+EN
Subjt:  IEIPMMYSQGLDMSPDNIMGTRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAAACGTTTCAAGCTATCGTAGAAATGTGCGAGCCGTCGTGTAGTGGGTTTGGTTGGAACGATGAAATGAAAAAAAAACTGACAATTTATTTAAACACTTCAAT
AAAGTCATCTTACTGCCAAAGGCTTCCTAAACAAGCCATTTTCTCATTACGACGACTTGTGCTACGTATTTGGGAAAAATCGTGTGACAGGAGCGCGAGCGGAGATATTC
GCCGATTTAGGGTTGAATGTGCCTTGAGGGGATTTCCCGCTGACGATGGTCACGATATAGAGATCCCTATGATGTACAGTCAGGGACTGGACATGTCGCCTGACAACATC
ATGGGCACACGACCCAGTCGCTTGAGTGAGGGGATCCCTGAACTGAGTACCCGTGATAGGGTGCGCCTTATGCGAATACTGATGCGCAATGTGAACGACATGAAAGGATT
CTTGGAGGTACCCGATGAGCTTAAGTTAGACTACTGCACGGTCATTCTTAAAGAGAACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAAACGTTTCAAGCTATCGTAGAAATGTGCGAGCCGTCGTGTAGTGGGTTTGGTTGGAACGATGAAATGAAAAAAAAACTGACAATTTATTTAAACACTTCAAT
AAAGTCATCTTACTGCCAAAGGCTTCCTAAACAAGCCATTTTCTCATTACGACGACTTGTGCTACGTATTTGGGAAAAATCGTGTGACAGGAGCGCGAGCGGAGATATTC
GCCGATTTAGGGTTGAATGTGCCTTGAGGGGATTTCCCGCTGACGATGGTCACGATATAGAGATCCCTATGATGTACAGTCAGGGACTGGACATGTCGCCTGACAACATC
ATGGGCACACGACCCAGTCGCTTGAGTGAGGGGATCCCTGAACTGAGTACCCGTGATAGGGTGCGCCTTATGCGAATACTGATGCGCAATGTGAACGACATGAAAGGATT
CTTGGAGGTACCCGATGAGCTTAAGTTAGACTACTGCACGGTCATTCTTAAAGAGAACGCTTGA
Protein sequenceShow/hide protein sequence
MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQRLPKQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHDIEIPMMYSQGLDMSPDNI
MGTRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKENA