; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0008565 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008565
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:10304470..10306956
RNA-Seq ExpressionPI0008565
SyntenyPI0008565
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]8.0e-4272.97Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN GWRDNPNLRWGN+NQ+  QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKG
        T AISK++GKG
Subjt:  TNAISKLEGKG

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-4374.77Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN GWRDNPNLRWGN+NQ+  QA STS+NQGTNLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKG
        T AISK++GKG
Subjt:  TNAISKLEGKG

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.2e-4272.07Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN GWRDNPNLRWGN+NQ+  QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKG
        T  ISK++GKG
Subjt:  TNAISKLEGKG

KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-4274.07Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP GNTYN GWRDNPNLRWGN+NQ+  QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKG
        ISK++GKG
Subjt:  ISKLEGKG

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]6.2e-4272.07Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN GWRDNPNLRWGN+NQ+  QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKG
        T  ISK++GKG
Subjt:  TNAISKLEGKG

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919103.0e-4272.07Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN GWRDNPNLRWGN+NQ+  QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKG
        T  ISK++GKG
Subjt:  TNAISKLEGKG

A0A5A7UID2 Retrotransposon gag protein1.3e-4274.07Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP GNTYN GWRDNPNLRWGN+NQ+  QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKG
        ISK++GKG
Subjt:  ISKLEGKG

A0A5D3CRR8 Retrotransposon gag protein9.3e-4474.77Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN GWRDNPNLRWGN+NQ+  QA STS+NQGTNLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKG
        T AISK++GKG
Subjt:  TNAISKLEGKG

A0A5D3DCG3 Retrotransposon gag protein3.0e-4272.07Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN GWRDNPNLRWGN+NQ+  QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKG
        T  ISK++GKG
Subjt:  TNAISKLEGKG

E5GBZ4 Retrotransposon gag protein3.9e-4272.97Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN GWRDNPNLRWGN+NQ+  QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKG
        T AISK++GKG
Subjt:  TNAISKLEGKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACATCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAATAATAATCAACAACCCATACAAGCAACTT
CTACTTCAAATAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAAT
GCAATAAGCAAGTTAGAAGGCAAAGGAACCAGGGATCGAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACATCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAATAATAATCAACAACCCATACAAGCAACTT
CTACTTCAAATAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAAT
GCAATAAGCAAGTTAGAAGGCAAAGGAACCAGGGATCGAGCTTAA
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTN
AISKLEGKGTRDRA