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PI0008566 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008566
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:18532345..18533090
RNA-Seq ExpressionPI0008566
SyntenyPI0008566
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-6858.37Show/hide
Query:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM
        MRGP+CSGFGWND+ KCI+AEK ++D+WV+SHPA KGLLNK FPHYD+L YVF +D AT G  E+F DVGSN P  YD F     +D +F  MYS+ L+M
Subjt:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM

Query:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK
        SPD+ MGTR  R SEGR  SS SK+K GG T +  +I+R+ +EY N+ L  I EW   QRQDA+ T  EVVRQL+ IP L+ +D  R +RI+IHNV+DMK
Subjt:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK

Query:  AFLDVPNELKLDYCTIILQDN
        AFL+VP+ +K  YC+IIL++N
Subjt:  AFLDVPNELKLDYCTIILQDN

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-6457.47Show/hide
Query:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM
        MR P+CSGFGWND+ KCIIAEK ++D+WVKSHPA KGLLNK F HYD+L YVFG+DRAT G  E+F D+GSN P  YD F      D +FP MYS  L+M
Subjt:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM

Query:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK
        SPDD M TR  R SE R  SS SK K  G   +  +I+R+ +EY N+ L  I EW   QRQDA+ T  E+VRQL+ IP L+ +D  R +RI++ NVDDMK
Subjt:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK

Query:  AFLDVPNELKLDYCTIILQDN
        AFL VP+ +K  YC+IILQ+N
Subjt:  AFLDVPNELKLDYCTIILQDN

KAA0063726.1 retrotransposon protein [Cucumis melo var. makuwa]4.6e-6458.37Show/hide
Query:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM
        M GP CSGFGWND+ KCI+AEK ++D+WVKSHPA KGLLNK F HYD+L YVFG+DRAT    E+F +V SN P EYD F T    D +FP MYSQ L+M
Subjt:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM

Query:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK
        SPDD MGTR  R SE R  SS SKRK  G   +  +I+R+ +EY N+ L  I EW   QRQ+AS T  EVVRQL+ IP L  +D  R + I++ NVDDMK
Subjt:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK

Query:  AFLDVPNELKLDYCTIILQDN
        AFLDVP+ +K  Y  IILQ+N
Subjt:  AFLDVPNELKLDYCTIILQDN

KAA0065737.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-6456.56Show/hide
Query:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM
        MRGP+CSGFGWND+ KCI+AEK ++D+W  SHPA KGLLNK F HYD+L YVFG+DRAT G  E+F D+GSN P  YD F      D +FP MYS  L+M
Subjt:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM

Query:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK
        SPDD M TR  R SE R  SS+SKRK  G   +  +I+R+ +EY N+ L  I EW   QRQDA+ T  ++VRQL+ IP L+ +D  R +RI++ NVDDMK
Subjt:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK

Query:  AFLDVPNELKLDYCTIILQDN
        AFL+VP+ +K  YC+IILQ+N
Subjt:  AFLDVPNELKLDYCTIILQDN

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]7.1e-6556.62Show/hide
Query:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM
        MRGPSC GFGWND +KCI+AEK L+DNWV+SHPA KGLLNK FP+YD+L YVFG+DRA     ETF DVGSNVP  ++ FP  D NDMEFP+M S R +M
Subjt:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM

Query:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK
        S DD    RP R ++ R  SS SKR+ GGQT E  ++I+  M    D L+ I EW +   +D S    EVVR L+ IP LSRLDM +C RI+++N+ DMK
Subjt:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK

Query:  AFLDVPNELKLDYCTIILQ
         FL++ NE KLDYCT++++
Subjt:  AFLDVPNELKLDYCTIILQ

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein1.1e-6858.37Show/hide
Query:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM
        MRGP+CSGFGWND+ KCI+AEK ++D+WV+SHPA KGLLNK FPHYD+L YVF +D AT G  E+F DVGSN P  YD F     +D +F  MYS+ L+M
Subjt:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM

Query:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK
        SPD+ MGTR  R SEGR  SS SK+K GG T +  +I+R+ +EY N+ L  I EW   QRQDA+ T  EVVRQL+ IP L+ +D  R +RI+IHNV+DMK
Subjt:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK

Query:  AFLDVPNELKLDYCTIILQDN
        AFL+VP+ +K  YC+IIL++N
Subjt:  AFLDVPNELKLDYCTIILQDN

A0A5A7U4M2 Retrotransposon protein7.7e-6557.47Show/hide
Query:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM
        MR P+CSGFGWND+ KCIIAEK ++D+WVKSHPA KGLLNK F HYD+L YVFG+DRAT G  E+F D+GSN P  YD F      D +FP MYS  L+M
Subjt:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM

Query:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK
        SPDD M TR  R SE R  SS SK K  G   +  +I+R+ +EY N+ L  I EW   QRQDA+ T  E+VRQL+ IP L+ +D  R +RI++ NVDDMK
Subjt:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK

Query:  AFLDVPNELKLDYCTIILQDN
        AFL VP+ +K  YC+IILQ+N
Subjt:  AFLDVPNELKLDYCTIILQDN

A0A5A7VBC5 Retrotransposon protein2.2e-6458.37Show/hide
Query:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM
        M GP CSGFGWND+ KCI+AEK ++D+WVKSHPA KGLLNK F HYD+L YVFG+DRAT    E+F +V SN P EYD F T    D +FP MYSQ L+M
Subjt:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM

Query:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK
        SPDD MGTR  R SE R  SS SKRK  G   +  +I+R+ +EY N+ L  I EW   QRQ+AS T  EVVRQL+ IP L  +D  R + I++ NVDDMK
Subjt:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK

Query:  AFLDVPNELKLDYCTIILQDN
        AFLDVP+ +K  Y  IILQ+N
Subjt:  AFLDVPNELKLDYCTIILQDN

A0A5A7VF53 Retrotransposon protein3.8e-6456.56Show/hide
Query:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM
        MRGP+CSGFGWND+ KCI+AEK ++D+W  SHPA KGLLNK F HYD+L YVFG+DRAT G  E+F D+GSN P  YD F      D +FP MYS  L+M
Subjt:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM

Query:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK
        SPDD M TR  R SE R  SS+SKRK  G   +  +I+R+ +EY N+ L  I EW   QRQDA+ T  ++VRQL+ IP L+ +D  R +RI++ NVDDMK
Subjt:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK

Query:  AFLDVPNELKLDYCTIILQDN
        AFL+VP+ +K  YC+IILQ+N
Subjt:  AFLDVPNELKLDYCTIILQDN

A0A5D3CIF5 Retrotransposon protein5.5e-6357.47Show/hide
Query:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM
        M GP CSGFGWND+ KCI+AEK ++D+WVKSHPA KGLLNK F HYD+L YVFG+ RAT    E+F +V SN P EYD F T    D +FP MYSQ L+M
Subjt:  MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDM

Query:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK
        SPDD MGTR  R SE R  SS SKRK  G   +  +I+R+ +EY N+ L  I EW   QRQ+AS T  EVVR+L+ IP L  +D  R + I++ NVDDMK
Subjt:  SPDDKMGTRPDRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMK

Query:  AFLDVPNELKLDYCTIILQDN
        AFLDVP+ +K  Y  IILQ+N
Subjt:  AFLDVPNELKLDYCTIILQDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein7.5e-0429.79Show/hide
Query:  GFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFG
        GF W+   + +I + +L+  ++K+HP  +    KP  ++ DLC ++G
Subjt:  GFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFG

AT2G24960.2 unknown protein4.7e-0628Show/hide
Query:  SGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRD
        +GF W+ +   +IA+ ++++ ++++HP  +    K  P Y +LC++FG++
Subjt:  SGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRD

AT4G02210.1 unknown protein1.0e-0529.79Show/hide
Query:  GFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFG
        GF W+++ + + A+ N++ +++K+H   +  + +P P+Y DLC + G
Subjt:  GFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFG

AT4G02210.2 unknown protein1.0e-0529.79Show/hide
Query:  GFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFG
        GF W+++ + + A+ N++ +++K+H   +  + +P P+Y DLC + G
Subjt:  GFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCCCATCGTGCAGTGGGTTCGGTTGGAACGATAAGCTCAAATGCATTATTGCCGAGAAAAACTTGTATGACAATTGGGTGAAGAGTCATCCAGCCACGAAGGG
CCTTCTAAACAAACCCTTTCCCCATTACGATGACCTTTGCTACGTCTTTGGAAGAGATCGTGCAACAAAAGGTTGCACTGAAACCTTTGTCGATGTTGGGTCGAACGTGC
CTGTAGAGTATGATGGATTTCCCACTTATGATGGGAATGATATGGAGTTCCCCACGATGTACAGTCAGAGACTGGACATGTCACCTGACGACAAAATGGGCACACGACCC
GATCGGTTTTCTGAGGGTAGGGCTGGTTCGAGTGATTCGAAGAGGAAATGGGGAGGGCAGACATTCGAGATGGTGGAAATTATTCGCAGTGTCATGGAATATGCGAATGA
CCATCTGAAGGCCATTGTAGAATGGCTCAAAGAACAACGCCAAGATGCAAGCGTGACATGTGCGGAAGTCGTTAGACAACTGCAGGACATCCCGAATCTCAGTAGACTGG
ACATGGTTCGTTGTATACGTATAATGATTCACAATGTGGATGACATGAAAGCATTTTTAGACGTCCCGAACGAGCTTAAGTTGGATTATTGCACGATCATTCTCCAAGAT
AACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCCCATCGTGCAGTGGGTTCGGTTGGAACGATAAGCTCAAATGCATTATTGCCGAGAAAAACTTGTATGACAATTGGGTGAAGAGTCATCCAGCCACGAAGGG
CCTTCTAAACAAACCCTTTCCCCATTACGATGACCTTTGCTACGTCTTTGGAAGAGATCGTGCAACAAAAGGTTGCACTGAAACCTTTGTCGATGTTGGGTCGAACGTGC
CTGTAGAGTATGATGGATTTCCCACTTATGATGGGAATGATATGGAGTTCCCCACGATGTACAGTCAGAGACTGGACATGTCACCTGACGACAAAATGGGCACACGACCC
GATCGGTTTTCTGAGGGTAGGGCTGGTTCGAGTGATTCGAAGAGGAAATGGGGAGGGCAGACATTCGAGATGGTGGAAATTATTCGCAGTGTCATGGAATATGCGAATGA
CCATCTGAAGGCCATTGTAGAATGGCTCAAAGAACAACGCCAAGATGCAAGCGTGACATGTGCGGAAGTCGTTAGACAACTGCAGGACATCCCGAATCTCAGTAGACTGG
ACATGGTTCGTTGTATACGTATAATGATTCACAATGTGGATGACATGAAAGCATTTTTAGACGTCCCGAACGAGCTTAAGTTGGATTATTGCACGATCATTCTCCAAGAT
AACGCTTGA
Protein sequenceShow/hide protein sequence
MRGPSCSGFGWNDKLKCIIAEKNLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRATKGCTETFVDVGSNVPVEYDGFPTYDGNDMEFPTMYSQRLDMSPDDKMGTRP
DRFSEGRAGSSDSKRKWGGQTFEMVEIIRSVMEYANDHLKAIVEWLKEQRQDASVTCAEVVRQLQDIPNLSRLDMVRCIRIMIHNVDDMKAFLDVPNELKLDYCTIILQD
NA