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PI0008578 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008578
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr05:8685874..8686751
RNA-Seq ExpressionPI0008578
SyntenyPI0008578
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060725.1 uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa]6.5e-5260.73Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        ME++RPISCCNV+YKCISKILADRI VWL SFI+ NQS F+ GRSI+DNILLC E+VG YH + G PR  +K                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  ----LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS
            L ANL KSS+FVAGV  E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITS IRSW+ARVLSF G LQLVRSVL S
Subjt:  ----LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]2.8e-4748.93Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        +ED+RPISCCNV+YKCISKILADR+RVWL SFI+ NQS F++GRSI++NILLC E+VG YH +SG PRC +K                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  ----------------------------------------------LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCA
                                                      L AN  KSS+F+AGV++E A+ LA   GF  G LPVRYLG+PLL+ RL+S+DC 
Subjt:  ----------------------------------------------LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCA

Query:  PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS
        PLIQRITSRIRS SARVLSFAGRLQLV SVL S
Subjt:  PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]1.6e-5060.96Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK-----------------LIANLG-----
        ME++RPISCCNV+YKCISKILADRI VWL SFI+ NQS F+ GRSI+DNILLC E+VG YH + G PR  +K                 L+  +G     
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK-----------------LIANLG-----

Query:  ------KSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS
              KSS+FVAGV  E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITS IRSW+ARVLSF G LQLVRSVL S
Subjt:  ------KSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]6.5e-5254.76Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        +ED+ PISCC+V+YKCIS+ILADR+RVWL SF++GNQ  F+ GRSI+DNILLC E+VG YH   G PRC MK                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  -----------------------LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGR
                               L ANL KS +F+ GV+S  A+ LA + GF++G LPVRYLG+PLLS RL+SSDC PLIQRITSRIRSWSARVLSFAGR
Subjt:  -----------------------LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGR

Query:  LQLVRSVLRS
        LQLVRSVLRS
Subjt:  LQLVRSVLRS

XP_031745634.1 uncharacterized protein LOC116406053 [Cucumis sativus]2.3e-4962.21Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSMFV-------------AGV
        +ED+ PISCC+V+YKCIS+ILADR+RVWL SF++GNQ  F+ GRSI+DNILLC E+VG YH   G PRC MK+  +L K+  +V               +
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSMFV-------------AGV

Query:  DSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS
            ++ LA + GF++G LPVRYLG+PLLS RL+SSDC PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS
Subjt:  DSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932251.4e-4748.93Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        +ED+RPISCCNV+YKCISKILADR+RVWL SFI+ NQS F++GRSI++NILLC E+VG YH +SG PRC +K                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  ----------------------------------------------LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCA
                                                      L AN  KSS+F+AGV++E A+ LA   GF  G LPVRYLG+PLL+ RL+S+DC 
Subjt:  ----------------------------------------------LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCA

Query:  PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS
        PLIQRITSRIRS SARVLSFAGRLQLV SVL S
Subjt:  PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS

A0A1S4E258 uncharacterized protein LOC1034968807.7e-5160.96Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK-----------------LIANLG-----
        ME++RPISCCNV+YKCISKILADRI VWL SFI+ NQS F+ GRSI+DNILLC E+VG YH + G PR  +K                 L+  +G     
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK-----------------LIANLG-----

Query:  ------KSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS
              KSS+FVAGV  E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITS IRSW+ARVLSF G LQLVRSVL S
Subjt:  ------KSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS

A0A5A7UP65 Reverse transcriptase3.1e-4443.51Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        +ED+RPISCCNV+YKCISKILADR+RVWL SFI+ NQS F++GRSI++NILLC E+VG YH +SG PRC +K                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  ---------------------------------------------------------------------------LIANLGKSSMFVAGVDSETATMLAD
                                                                                   L AN  KSS+F+AGV++E A+ LA 
Subjt:  ---------------------------------------------------------------------------LIANLGKSSMFVAGVDSETATMLAD

Query:  SKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS
          GF  G LPVRYLG+PLL+ RL+S+DC PLIQRITSRIRS SARVLSFAGRLQLV SVL S
Subjt:  SKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS

A0A5A7V4C1 Reverse transcriptase domain-containing protein3.1e-5260.73Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------
        ME++RPISCCNV+YKCISKILADRI VWL SFI+ NQS F+ GRSI+DNILLC E+VG YH + G PR  +K                            
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMK----------------------------

Query:  ----LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS
            L ANL KSS+FVAGV  E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITS IRSW+ARVLSF G LQLVRSVL S
Subjt:  ----LIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein6.8e-4750.45Show/hide
Query:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSM---FVAGV----------
        ME++RPISCCNV+YKCISKILADR+RVWL SFI  NQS F+ GRSI+DNILLC E+V  YH +SG PRC +K+       S+   F+ GV          
Subjt:  MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSM---FVAGV----------

Query:  --------------------------------------------------DSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIR
                                                           +E A+ LA S GF LG LPVRYLG+PLL+ RL+S+DCAPLIQRITSRIR
Subjt:  --------------------------------------------------DSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIR

Query:  SWSARVLSFAGRLQLVRSVLRS
        SW+A VLSFAGRLQLVRSVLRS
Subjt:  SWSARVLSFAGRLQLVRSVLRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.6e-1451.32Show/hide
Query:  VAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS
        +AGV       +  S  FA G LPVRYLG+PLL+ ++ +SD  PL+++I  RI  W+AR LSFAGRLQL+ SV+ S
Subjt:  VAGVDSETATMLADSKGFALGTLPVRYLGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATTATAGGCCTATTTCATGTTGTAATGTGGTCTATAAGTGCATTTCTAAGATTTTGGCTGATAGAATTCGTGTGTGGCTTTCGTCTTTTATCAATGGTAATCA
GTCCACCTTTGTTGTGGGGAGGAGTATTGTGGATAACATTCTGCTTTGTCATGAGATGGTAGGGGATTACCATGGTTCTTCTGGGATGCCTAGATGTGCGATGAAGTTGA
TTGCTAATCTAGGGAAGAGCTCTATGTTTGTGGCGGGAGTTGATAGTGAGACTGCTACTATGTTGGCGGACAGTAAGGGGTTTGCTCTGGGTACTCTGCCTGTTCGTTAC
CTGGGTATTCCCTTACTCTCTTGTCGGCTACAGTCTTCGGATTGTGCTCCGCTCATCCAACGTATTACTAGTCGGATTCGGTCTTGGTCGGCTAGAGTATTGTCCTTCGC
TGGTAGACTTCAGCTTGTGCGTTCGGTGTTGCGAAGTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATTATAGGCCTATTTCATGTTGTAATGTGGTCTATAAGTGCATTTCTAAGATTTTGGCTGATAGAATTCGTGTGTGGCTTTCGTCTTTTATCAATGGTAATCA
GTCCACCTTTGTTGTGGGGAGGAGTATTGTGGATAACATTCTGCTTTGTCATGAGATGGTAGGGGATTACCATGGTTCTTCTGGGATGCCTAGATGTGCGATGAAGTTGA
TTGCTAATCTAGGGAAGAGCTCTATGTTTGTGGCGGGAGTTGATAGTGAGACTGCTACTATGTTGGCGGACAGTAAGGGGTTTGCTCTGGGTACTCTGCCTGTTCGTTAC
CTGGGTATTCCCTTACTCTCTTGTCGGCTACAGTCTTCGGATTGTGCTCCGCTCATCCAACGTATTACTAGTCGGATTCGGTCTTGGTCGGCTAGAGTATTGTCCTTCGC
TGGTAGACTTCAGCTTGTGCGTTCGGTGTTGCGAAGTTTTTAG
Protein sequenceShow/hide protein sequence
MEDYRPISCCNVVYKCISKILADRIRVWLSSFINGNQSTFVVGRSIVDNILLCHEMVGDYHGSSGMPRCAMKLIANLGKSSMFVAGVDSETATMLADSKGFALGTLPVRY
LGIPLLSCRLQSSDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSF