; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0008596 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008596
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 12
Genome locationchr12:1845959..1847963
RNA-Seq ExpressionPI0008596
SyntenyPI0008596
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006591 - RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR039747 - DNA-directed RNA polymerases I, II, and III subunit RPABC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG56999.1 hypothetical protein EZV62_018312 [Acer yangbiense]2.5e-2198.04Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_003534102.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max]3.2e-2198.04Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_012836463.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe guttata]2.5e-2198.04Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCG ENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_014507408.2 DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna radiata var. radiata]3.2e-2198.04Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_015579873.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis]6.5e-22100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

TrEMBL top hitse value%identityAlignment
A0A0A0LQM4 Uncharacterized protein3.1e-22100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A1S4E4H5 DNA-directed RNA polymerases II, IV and V subunit 123.1e-22100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A6J1C6Z8 DNA-directed RNA polymerases II, IV and V subunit 123.1e-22100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A6J1GTY0 DNA-directed RNA polymerases II, IV and V subunit 123.1e-22100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A6J1KJQ4 DNA-directed RNA polymerases II, IV and V subunit 123.1e-22100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

SwissProt top hitse value%identityAlignment
P48011 DNA-directed RNA polymerases I, II, and III subunit RPABC43.7e-1255.1Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

P53803 DNA-directed RNA polymerases I, II, and III subunit RPABC41.3e-1259.18Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

Q3ZBC0 DNA-directed RNA polymerases I, II, and III subunit RPABC41.3e-1259.18Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

Q63871 DNA-directed RNA polymerases I, II, and III subunit RPABC41.3e-1259.18Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

Q9FLM8 DNA-directed RNA polymerases II, IV and V subunit 122.3e-2288.24Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

Arabidopsis top hitse value%identityAlignment
AT1G53690.1 DNA directed RNA polymerase, 7 kDa subunit1.3e-1273.17Show/hide
Query:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR
        D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Subjt:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR

AT5G41010.1 DNA directed RNA polymerase, 7 kDa subunit1.6e-2388.24Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCAACCCGAACCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCT
CTACAAGAAGCGCACCCGTCGCATTGTTCAGTACGAGGCCCGCTGA
mRNA sequenceShow/hide mRNA sequence
GAAAAACCCTACTACAGGTTTTCCTCCCTTTTATTTTGTTTGATTTTCCCGTCACCCATCATTATAGTCAAGCCCTACGCGACTTCGATTTCTTTCTCTGCTCTCGTATC
GCCCTCGCAGCGGCAGGAAGATTTTTGAAGTTTGACTCATGGATCCTCAACCCGAACCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGT
GATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTACGAGGCCCGCTGAAATGATTATTCTGGCGATGGACTTCT
AGATCATGCATATTTTGTAAGTTTCTTTTAGGAAAACAAAAACGAAACTCAGTATGGATTAAGGACTTGCTGTAGTACAAACATGTTGATAATGCTGCTACTGAATGATT
AAATATTTTTCGTTTCAAACGCCATTATTCTCTTGTGGTAACTCCATATCCAACTGATAATATAAATTAATGGAATGGTTCAGTTTTGCATAATGCTGCTACTGAATGAT
TAATTA
Protein sequenceShow/hide protein sequence
MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR