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PI0008653 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008653
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr06:16713464..16714586
RNA-Seq ExpressionPI0008653
SyntenyPI0008653
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038951.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.9e-4470.87Show/hide
Query:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG
        RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVYHNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TG
Subjt:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG

Query:  YFDSAVGPSSSYMDASPSTSYMYGHGR
        Y+D+ + PSS YMD  PS  YM+GH R
Subjt:  YFDSAVGPSSSYMDASPSTSYMYGHGR

KAA0062642.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.9e-4270.87Show/hide
Query:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG
        RSNN R+RDVADD Q  LDI N+NERYMEE+H MYD+PIVPP VHRG  RVEEAELD+VYHNVEEVP  T+TQSQ+ Y S MTMMP F  GY D     G
Subjt:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG

Query:  YFDSAVGPSSSYMDASPSTSYMYGHGR
        Y+D+ VGPSSSY+D SPSTSYM+GH R
Subjt:  YFDSAVGPSSSYMDASPSTSYMYGHGR

TYK01176.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]3.5e-4464.71Show/hide
Query:  MFDLLQRDQ-----------------RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQS
        MFDLLQRDQ                 RSNN R+RDVADD Q  LDI N+NERYMEE+H MYD+PIVPP VHRG  RVEEAELD+VYHNVEEVP  T+TQS
Subjt:  MFDLLQRDQ-----------------RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQS

Query:  QSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTSYMYGHGR
        Q+ Y S MTMMP F  GY D     GY+D+ VGPSSSY+D SPSTSYM+GH R
Subjt:  QSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTSYMYGHGR

TYK11193.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.7e-4360.76Show/hide
Query:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG
        RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVYHNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TG
Subjt:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG

Query:  YFDSAVGPSSSYMDASPSTSYMYGHGRD-RENIMNIKVYQIHKSTNKNQRIKMSKSHI
        Y+D+ + PSS YMD  PS  YM+GH R   E+   +  Y+  +ST    R +  +  I
Subjt:  YFDSAVGPSSSYMDASPSTSYMYGHGRD-RENIMNIKVYQIHKSTNKNQRIKMSKSHI

TYK23842.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]7.0e-4572.44Show/hide
Query:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG
        RSNN R+RDV +DPQ VLDI N+NERYME++H +YD+PIVPP VHR R RVEEAELDEVYHNVEEVPP T+TQSQ+ Y S MTMMP FG GY D     G
Subjt:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG

Query:  YFDSAVGPSSSYMDASPSTSYMYGHGR
        Y+D+ VGP SSYMD  PSTSYMYGHGR
Subjt:  YFDSAVGPSSSYMDASPSTSYMYGHGR

TrEMBL top hitse value%identityAlignment
A0A5A7TBF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.9e-4470.87Show/hide
Query:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG
        RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVYHNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TG
Subjt:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG

Query:  YFDSAVGPSSSYMDASPSTSYMYGHGR
        Y+D+ + PSS YMD  PS  YM+GH R
Subjt:  YFDSAVGPSSSYMDASPSTSYMYGHGR

A0A5A7V342 Mediator of RNA polymerase II transcription subunit 12-like isoform X19.2e-4370.87Show/hide
Query:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG
        RSNN R+RDVADD Q  LDI N+NERYMEE+H MYD+PIVPP VHRG  RVEEAELD+VYHNVEEVP  T+TQSQ+ Y S MTMMP F  GY D     G
Subjt:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG

Query:  YFDSAVGPSSSYMDASPSTSYMYGHGR
        Y+D+ VGPSSSY+D SPSTSYM+GH R
Subjt:  YFDSAVGPSSSYMDASPSTSYMYGHGR

A0A5D3BSG8 GATA zinc finger domain-containing protein 10-like isoform X21.7e-4464.71Show/hide
Query:  MFDLLQRDQ-----------------RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQS
        MFDLLQRDQ                 RSNN R+RDVADD Q  LDI N+NERYMEE+H MYD+PIVPP VHRG  RVEEAELD+VYHNVEEVP  T+TQS
Subjt:  MFDLLQRDQ-----------------RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQS

Query:  QSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTSYMYGHGR
        Q+ Y S MTMMP F  GY D     GY+D+ VGPSSSY+D SPSTSYM+GH R
Subjt:  QSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTSYMYGHGR

A0A5D3CH23 Mediator of RNA polymerase II transcription subunit 12-like isoform X18.3e-4460.76Show/hide
Query:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG
        RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVYHNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TG
Subjt:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG

Query:  YFDSAVGPSSSYMDASPSTSYMYGHGRD-RENIMNIKVYQIHKSTNKNQRIKMSKSHI
        Y+D+ + PSS YMD  PS  YM+GH R   E+   +  Y+  +ST    R +  +  I
Subjt:  YFDSAVGPSSSYMDASPSTSYMYGHGRD-RENIMNIKVYQIHKSTNKNQRIKMSKSHI

A0A5D3DJV7 Serine/threonine-protein phosphatase 7 long form-like protein3.4e-4572.44Show/hide
Query:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG
        RSNN R+RDV +DPQ VLDI N+NERYME++H +YD+PIVPP VHR R RVEEAELDEVYHNVEEVPP T+TQSQ+ Y S MTMMP FG GY D     G
Subjt:  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTG

Query:  YFDSAVGPSSSYMDASPSTSYMYGHGR
        Y+D+ VGP SSYMD  PSTSYMYGHGR
Subjt:  YFDSAVGPSSSYMDASPSTSYMYGHGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGACCTTCTTCAACGTGATCAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACAT
GGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAG
AGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATAT
TTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTA
TCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTG
TGGGACACATTGATTTATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGACCTTCTTCAACGTGATCAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACAT
GGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAG
AGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATAT
TTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTA
TCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTG
TGGGACACATTGATTTATTTTAA
Protein sequenceShow/hide protein sequence
MFDLLQRDQRSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGY
FDSAVGPSSSYMDASPSTSYMYGHGRDRENIMNIKVYQIHKSTNKNQRIKMSKSHIDFKVVDDNRLEIDDVRVVGHIDLF