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PI0008658 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008658
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr02:17647759..17648190
RNA-Seq ExpressionPI0008658
SyntenyPI0008658
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025734.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.6e-4764.79Show/hide
Query:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT
        M++I+EG S +RPPVLDG NY+YWK RMI  IK++D K W+ +V G+EPP VT++  SVLKP+  WTDVE+QA +G +RA+NAI++GVD NVFKLIN+CT
Subjt:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT

Query:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
        + KEAWKILEVAYEGTSKVK S LQL+++KFE LKM E+E +
Subjt:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
KAA0032368.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.2e-4978.29Show/hide
Query:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT
        M+MIKEGGS TRPPVLDG NYAYWKARM AF+KSID+KTWK V+  WEPPT+T++ KS  K +  WTD EDQA LG SRALNAIY+  DQNVFKLINTCT
Subjt:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT

Query:  SAKEAWKILEVAYEGTSKVKTSRLQLLST
        SAKEAWKILEVAYEGTSKVKTS LQLLS+
Subjt:  SAKEAWKILEVAYEGTSKVKTSRLQLLST
KAA0033522.1 gag-pol polyprotein [Cucumis melo var. makuwa]9.6e-4761.97Show/hide
Query:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT
        M++I+EG S +RPPVLDG NY+YWK RMI FI+++D + W+ +V G++PP +T+ G SV KP+  WTD E+Q+F+G +RALNAI++GVD NVFKLIN+C+
Subjt:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT

Query:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
        +AKEAWK LEVAYEGTSKVK SRLQL+++KFE+L+M E+E +
Subjt:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
KAA0038419.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.3e-4865.49Show/hide
Query:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT
        M++I+EG S +RPPV DG NY YWK RMI F+K++D K W+V+V G+EPP VTV+G SV KPK  WTD E+QA +G +RA+NAI++G+D NVFKLIN+CT
Subjt:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT

Query:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
        +AKEAWKILEVAYEGTSKVK SRLQL+++KFE+L+M E+E +
Subjt:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
TYJ96973.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.9e-4765.49Show/hide
Query:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT
        M++I+EG S +RPPV DG NY YWK RMI  IK++D K W+V+V G+EPP VTV+G SV KPK  WTD E+QA +G +RA+NAI++GVD NVFKLIN+CT
Subjt:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT

Query:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
        +AKEAWKILEVAYEGTSKVK SRLQL+++KFE+L+M ++E +
Subjt:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
TrEMBL top hitse value%identityAlignment
A0A5A7SJ95 Gag-pol polyprotein2.7e-4764.79Show/hide
Query:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT
        M++I+EG S +RPPVLDG NY+YWK RMI  IK++D K W+ +V G+EPP VT++  SVLKP+  WTDVE+QA +G +RA+NAI++GVD NVFKLIN+CT
Subjt:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT

Query:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
        + KEAWKILEVAYEGTSKVK S LQL+++KFE LKM E+E +
Subjt:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
A0A5A7SP99 Gag-pol polyprotein5.9e-5078.29Show/hide
Query:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT
        M+MIKEGGS TRPPVLDG NYAYWKARM AF+KSID+KTWK V+  WEPPT+T++ KS  K +  WTD EDQA LG SRALNAIY+  DQNVFKLINTCT
Subjt:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT

Query:  SAKEAWKILEVAYEGTSKVKTSRLQLLST
        SAKEAWKILEVAYEGTSKVKTS LQLLS+
Subjt:  SAKEAWKILEVAYEGTSKVKTSRLQLLST
A0A5A7TAN7 Gag-pol polyprotein1.1e-4865.49Show/hide
Query:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT
        M++I+EG S +RPPV DG NY YWK RMI F+K++D K W+V+V G+EPP VTV+G SV KPK  WTD E+QA +G +RA+NAI++G+D NVFKLIN+CT
Subjt:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT

Query:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
        +AKEAWKILEVAYEGTSKVK SRLQL+++KFE+L+M E+E +
Subjt:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
A0A5D3B9V9 Gag-pol polyprotein4.6e-4761.97Show/hide
Query:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT
        M++I+EG S +RPPVLDG NY+YWK RMI FI+++D + W+ +V G++PP +T+ G SV KP+  WTD E+Q+F+G +RALNAI++GVD NVFKLIN+C+
Subjt:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT

Query:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
        +AKEAWK LEVAYEGTSKVK SRLQL+++KFE+L+M E+E +
Subjt:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
A0A5D3BCD8 Gag-pol polyprotein9.3e-4865.49Show/hide
Query:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT
        M++I+EG S +RPPV DG NY YWK RMI  IK++D K W+V+V G+EPP VTV+G SV KPK  WTD E+QA +G +RA+NAI++GVD NVFKLIN+CT
Subjt:  MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCT

Query:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
        +AKEAWKILEVAYEGTSKVK SRLQL+++KFE+L+M ++E +
Subjt:  SAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGATCAAAGAAGGAGGATCCATAACACGGCCACCAGTTCTTGATGGAACAAACTATGCATATTGGAAAGCTCGTATGATTGCCTTTATAAAATCTATTGATAG
TAAGACTTGGAAAGTCGTTGTTGTTGGTTGGGAGCCACCAACTGTCACTGTTGAAGGTAAATCTGTTTTAAAACCAAAAGAGATCTGGACAGATGTTGAAGATCAAGCCT
TTCTAGGTAAATCAAGAGCCCTCAATGCCATTTATGATGGGGTTGATCAGAATGTTTTTAAATTGATAAATACATGTACTTCTGCAAAAGAAGCATGGAAAATTTTGGAG
GTGGCTTATGAAGGTACATCTAAAGTTAAAACTTCTCGCTTACAATTGCTAAGTACAAAATTTGAATCTTTAAAAATGGTTGAAGAAGAGAAGATAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATATGATCAAAGAAGGAGGATCCATAACACGGCCACCAGTTCTTGATGGAACAAACTATGCATATTGGAAAGCTCGTATGATTGCCTTTATAAAATCTATTGATAG
TAAGACTTGGAAAGTCGTTGTTGTTGGTTGGGAGCCACCAACTGTCACTGTTGAAGGTAAATCTGTTTTAAAACCAAAAGAGATCTGGACAGATGTTGAAGATCAAGCCT
TTCTAGGTAAATCAAGAGCCCTCAATGCCATTTATGATGGGGTTGATCAGAATGTTTTTAAATTGATAAATACATGTACTTCTGCAAAAGAAGCATGGAAAATTTTGGAG
GTGGCTTATGAAGGTACATCTAAAGTTAAAACTTCTCGCTTACAATTGCTAAGTACAAAATTTGAATCTTTAAAAATGGTTGAAGAAGAGAAGATAGTTTAG
Protein sequenceShow/hide protein sequence
MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILE
VAYEGTSKVKTSRLQLLSTKFESLKMVEEEKIV