CuGenDBv2

Gene ID	PI0008671
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	RRM domain-containing protein
Genome location	chr10:19112504..19113341
RNA-Seq Expression	PI0008671
Synteny	PI0008671
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK15537.1 thaumatin-like protein 1 [Cucumis melo var. makuwa]

8.7e-96

97.37

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Query:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLP+SAAKRRRPPP T DDDLEKPVSKPAPPLALVVVDLP  CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

XP_008446301.1 PREDICTED: uncharacterized protein At1g27050 [Cucumis melo]

8.7e-96

97.37

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Query:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLP+SAAKRRRPPP T DDDLEKPVSKPAPPLALVVVDLP  CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

XP_011655662.1 uncharacterized protein At1g27050 [Cucumis sativus]

8.7e-96

96.84

Show/hide

Query:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLP+SA KRRRPPP TE+DDLEKPVSKPAPPLALVVVDLP HCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]

2.8e-86

87.63

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Query:  MGRKRDKPYPSSHLPSSAAKRRRPPP----PTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT
        MGRKRDKPYPS+H  +S AKRRR  P    P EDDD++KP+ KPAPPLALVVVDLP HCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPP----PTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]

8.1e-94

93.3

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Query:  MGRKRDKPYPSSHLPSSAAKRRRPPP----PTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT
        MGRKRDKPYPSSHLP+S AKRRRPPP    PTED+D++KP+SKPAPPLALVVVDLP HCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPP----PTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTW9 RRM domain-containing protein

4.2e-96

96.84

Show/hide

Query:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLP+SA KRRRPPP TE+DDLEKPVSKPAPPLALVVVDLP HCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

A0A1S3BE88 uncharacterized protein At1g27050

4.2e-96

97.37

Show/hide

Query:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLP+SAAKRRRPPP T DDDLEKPVSKPAPPLALVVVDLP  CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

A0A5A7STE1 Homeobox-leucine zipper protein ATHB-54

4.2e-96

97.37

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Query:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLP+SAAKRRRPPP T DDDLEKPVSKPAPPLALVVVDLP  CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

A0A5D3CUC0 Thaumatin-like protein 1

4.2e-96

97.37

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Query:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLP+SAAKRRRPPP T DDDLEKPVSKPAPPLALVVVDLP  CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

A0A6J1KFA1 uncharacterized protein At1g27050

1.4e-86

87.63

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Query:  MGRKRDKPYPSSHLPSSAAKRRRPPP----PTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT
        MGRKRDKPYPS+H  +S AKRRR  P    P EDDD++KP+ KPAPPLALVVVDLP HCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPP----PTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

SwissProt top hits

e value

%identity

Alignment

P0CJ66 Uncharacterized protein At1g27050

1.7e-49

51.22

Show/hide

Query:  MGRKRDKPYPSSHLPSSAAKRRRPPPPT---EDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA
        M RKRDKPY + H P+  +KRRRP  P+    D+ ++KP++KP PP ALVV+ LP +CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+  
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPPPT---EDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA

Query:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSN----------SSSRSDVPFRGREVVA
        + +PSF  +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGRS++LAS IVNPR  N          SS  +    + R +V 
Subjt:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSN----------SSSRSDVPFRGREVVA

Query:  YDDIL
        YDDI+
Subjt:  YDDIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G27050.1 homeobox protein 54

1.2e-50

51.22

Show/hide

Query:  MGRKRDKPYPSSHLPSSAAKRRRPPPPT---EDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA
        M RKRDKPY + H P+  +KRRRP  P+    D+ ++KP++KP PP ALVV+ LP +CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+  
Subjt:  MGRKRDKPYPSSHLPSSAAKRRRPPPPT---EDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA

Query:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSN----------SSSRSDVPFRGREVVA
        + +PSF  +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGRS++LAS IVNPR  N          SS  +    + R +V 
Subjt:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSN----------SSSRSDVPFRGREVVA

Query:  YDDIL
        YDDI+
Subjt:  YDDIL

Sequences

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CDS sequence

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ATGGGTCGCAAGAGAGATAAACCCTACCCTTCCTCCCACCTTCCTTCCTCCGCCGCTAAGAGGCGACGCCCTCCGCCACCTACGGAGGACGATGATTTGGAAAAGCCCGT
GTCGAAACCTGCGCCACCGCTTGCCCTAGTCGTCGTTGACCTTCCTTTACACTGTTCGGTCCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCC
GAATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACTAAAGACTCCGCCGATGCTGCCATGACCGCCGCCCTTGATCCCTCCTTCGCCTTCACCATTGATTCCAAG
AAGGTTCAGGTACTATGGGCGAATGATCCTCAAGTCCAATGGCGACAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTATCTTCAAAGCTCTTGCGGGCAGAGGT
GCCACTAAGCAGACATGGAAGAAGCAATAAGCTTGCTTCCACCATTGTCAATCCCAGAAGAAGCAACAGTTCTTCAAGGTCAGATGTGCCTTTTAGGGGCAGGGAAGTTG
TTGCTTATGATGATATTCTCTAA

mRNA sequence

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Protein sequence

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MGRKRDKPYPSSHLPSSAAKRRRPPPPTEDDDLEKPVSKPAPPLALVVVDLPLHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSK
KVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDVPFRGREVVAYDDIL

PI0008671 (gene) of Melon (PI 482460) v1 genome