CuGenDBv2

Gene ID	PI0008751
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr06:11031581..11032320
RNA-Seq Expression	PI0008751
Synteny	PI0008751
Gene Ontology terms	NA
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]

1.7e-66

62.38

Show/hide

Query:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI
        M +SS  PKH W KEE+A LVECLVELV++ GWRSDNGTFRPGY N L +MM  ++ G NI A+TID RIK+MKR F A++EM+GP+CSGFGWNDE KCI
Subjt:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI

Query:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE
        +AEK+++D       SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F DIG N PP YD   A    D +FP MYS  L+MS D++M TR+ R+ E
Subjt:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE

Query:  AR
         R
Subjt:  AR

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]

1.0e-66

62.38

Show/hide

Query:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI
        M +SS  PKH W KEE+A LVECLVELV++ GWRSDNGTFRPGY N L +MM  ++ G NI A+TID RIK+MKR F A++EM+GP+CSGFGWNDE KCI
Subjt:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI

Query:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE
        +AEK+++D       SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F DIG N PP YD   A    D +FP MYS  L+MS D++M TR+ R+ E
Subjt:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE

Query:  AR
         R
Subjt:  AR

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]

1.7e-66

62.38

Show/hide

Query:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI
        M +SS  PKH W KEE+A LVECLVELV++ GWRSDNGTFRPGY N L +MM  ++ G NI A+TID RIK+MKR F A++EM+GP+CSGFGWNDE KCI
Subjt:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI

Query:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE
        +AEK+++D       SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F DIG N PP YD   A    D +FP MYS  L+MS D++M TR+ R+ E
Subjt:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE

Query:  AR
         R
Subjt:  AR

KAA0048377.1 retrotransposon protein [Cucumis melo var. makuwa]

1.7e-66

62.38

Show/hide

Query:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI
        M +SS  PKH W KEE+A LVECLVELV++ GWRSDNGTFRPGY N L +MM  ++ G NI A+TID RIK+MKR F A++EM+GP+CSGFGWNDE KCI
Subjt:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI

Query:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE
        +AEK+++D       SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F DIG N PP YD   A    D +FP MYS  L+MS D++M TR+ R+ E
Subjt:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE

Query:  AR
         R
Subjt:  AR

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-67

63.37

Show/hide

Query:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI
        MA+SS  PKH W KEE+A LVECLVELV++ GWRSDNGTFRPGY N L +MM  ++ G NI A+TID RIK+MKR F A++EM+GP+CSGFGWNDE KCI
Subjt:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI

Query:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE
        + EK+L+D     V+SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F DIG N PP YD   A    D +FP MYS  L+MS D++M TR+ R+ E
Subjt:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE

Query:  AR
         R
Subjt:  AR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2A6 Retrotransposon protein

8.2e-67

62.38

Show/hide

Query:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI
        M +SS  PKH W KEE+A LVECLVELV++ GWRSDNGTFRPGY N L +MM  ++ G NI A+TID RIK+MKR F A++EM+GP+CSGFGWNDE KCI
Subjt:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI

Query:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE
        +AEK+++D       SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F DIG N PP YD   A    D +FP MYS  L+MS D++M TR+ R+ E
Subjt:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE

Query:  AR
         R
Subjt:  AR

A0A5A7UME4 Retrotransposon protein

8.2e-67

62.38

Show/hide

Query:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI
        M +SS  PKH W KEE+A LVECLVELV++ GWRSDNGTFRPGY N L +MM  ++ G NI A+TID RIK+MKR F A++EM+GP+CSGFGWNDE KCI
Subjt:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI

Query:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE
        +AEK+++D       SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F DIG N PP YD   A    D +FP MYS  L+MS D++M TR+ R+ E
Subjt:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE

Query:  AR
         R
Subjt:  AR

A0A5D3C1M0 Retrotransposon protein

5.7e-68

63.37

Show/hide

Query:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI
        MA+SS  PKH W KEE+A LVECLVELV++ GWRSDNGTFRPGY N L +MM  ++ G NI A+TID RIK+MKR F A++EM+GP+CSGFGWNDE KCI
Subjt:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI

Query:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE
        + EK+L+D     V+SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F DIG N PP YD   A    D +FP MYS  L+MS D++M TR+ R+ E
Subjt:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE

Query:  AR
         R
Subjt:  AR

A0A5D3CBF7 Retrotransposon protein

8.2e-67

62.38

Show/hide

Query:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI
        M +SS  PKH W KEE+A LVECLVELV++ GWRSDNGTFRPGY N L +MM  ++ G NI A+TID RIK+MKR F A++EM+GP+CSGFGWNDE KCI
Subjt:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI

Query:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE
        +AEK+++D       SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F DIG N PP YD   A    D +FP MYS  L+MS D++M TR+ R+ E
Subjt:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE

Query:  AR
         R
Subjt:  AR

A0A5D3DPR5 Retrotransposon protein

4.8e-67

62.38

Show/hide

Query:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI
        M +SS  PKH W KEE+A LVECLVELV++ GWRSDNGTFRPGY N L +MM  ++ G NI A+TID RIK+MKR F A++EM+GP+CSGFGWNDE KCI
Subjt:  MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCI

Query:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE
        +AEK+++D       SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F DIG N PP YD   A    D +FP MYS  L+MS D++M TR+ R+ E
Subjt:  IAEKDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFE

Query:  AR
         R
Subjt:  AR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.1 unknown protein

1.0e-05

22.56

Show/hide

Query:  SSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCIIAE
        +S   +  W    D  L++ LVE V ++G R         ++  +     K    HN     +  R K ++R +  I  +     +GF W+     +IA+
Subjt:  SSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCIIAE

Query:  KDLYD--------------------ITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGR
         D+++                    +    VQ+HP A+    K  P Y +LC++FG++  ++GR
Subjt:  KDLYD--------------------ITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGR

AT2G24960.2 unknown protein

2.2e-08

25.69

Show/hide

Query:  SSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCIIAE
        +S   +  W    D  L++ LVE V ++G R         ++  +     K    HN     +  R K ++R +  I  +     +GF W+     +IA+
Subjt:  SSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCIIAE

Query:  KDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGR
         D+++   T +Q+HP A+    K  P Y +LC++FG++  ++GR
Subjt:  KDLYDITTTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAACTTCTTCAAGCGCCCCGAAGCACCACTGGATGAAAGAGGAAGATGCCGTCCTCGTTGAATGTCTGGTGGAATTGGTATCATCCAGCGGGTGGAGGTCGGACAA
TGGGACGTTTAGACCCGGGTACCATAATCATCTACAGAAAATGATGGTCAAGCGGATGCTGGGACATAACATAACGGCTACGACAATAGATTGTCGAATCAAGATAATGA
AAAGAGCATTCCAAGCGATATCTGAAATGAAGGGCCCATCGTGCAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTATGACATTACT
ACAACACTTGTACAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACTCTTTCCCCATTACGACGACCTTTGCTACGTCTTTGGAAGAGATCGTGCAACAGAAGGTCG
AGCTGAAACCTTCGGTGATATTGGGTTGAATGTGCCTCCAAGATACGATGGATTTCCCGCGTATGACGGGAACGATATGGAGTTCCCGACAATGTACAGTCAGAGACTGG
ACATGTCATCTGACAACATAATGGGTACACGATCCGGTCGGTTGTTTGAGGCTAGGGTGTTCGAGTGGTTTGAAGAGAAAACGGGGAGGGCAGGCGTTGGAGACGACAAA
AATTATTCGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MATSSSAPKHHWMKEEDAVLVECLVELVSSSGWRSDNGTFRPGYHNHLQKMMVKRMLGHNITATTIDCRIKIMKRAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDIT
TTLVQSHPAAKGLLNKLFPHYDDLCYVFGRDRATEGRAETFGDIGLNVPPRYDGFPAYDGNDMEFPTMYSQRLDMSSDNIMGTRSGRLFEARVFEWFEEKTGRAGVGDDK
NYS

PI0008751 (gene) of Melon (PI 482460) v1 genome