CuGenDBv2

Gene ID	PI0008778
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag-pro-like protein
Genome location	chr01:11575050..11575982
RNA-Seq Expression	PI0008778
Synteny	PI0008778
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036933.1 uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]

6.0e-78

75.76

Show/hide

Query:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD
        +I + GEEDFLITKPVST YVEA E+ALECSF SF+I HAT+ME  VDEV+KPHK K+EVMTTR+M  G  SLN++LE LLK+PSN+GRFGLGYKPS+ D
Subjt:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD

Query:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR
        KIRLQE+KKKKRL K +M+EFDP +K IP LYDTFKSAGISYSS +S+ KD LLTKMESL +AAVA E SFEG+TVYACPPDFELNNWD VDLPTFSR
Subjt:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR

KAA0036947.1 uncharacterized protein E6C27_scaffold86G00270 [Cucumis melo var. makuwa]

4.2e-79

76.77

Show/hide

Query:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD
        +I + GEEDFLITKPVST YVEA E+ALECSFRSF+I HAT+ME  VDEV+KPHK K+EVMTTR+M  G  SLN++LE LLK+PSN+GRFGLGYKPS+ D
Subjt:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD

Query:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR
        KIRLQEEKKKKRLAK +M+EFDP +K IP LYDTFKSAGISYSS +S+ KD LLTKMESL +A VA E SFEG+TVYACPPDFELNNWD VDLPTFSR
Subjt:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

4.2e-79

76.77

Show/hide

Query:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD
        +I + GEEDFLITKPVST YVEA+E+ALECSFRSF+I HAT+ME  VDEV+KPHK K+EVMTTR+M  G  SLN++LE LLK+PSN+GRFGLGYKPS+ D
Subjt:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD

Query:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR
        KIRLQE KKKKRLAK +M+EFDP +K IP LYDTFKSAGISYSS +S+ KD LLTKMESL +AAVA E SFEG+TVYACPPDFELNNWD VDLPTFSR
Subjt:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR

TYK04059.1 uncharacterized protein E5676_scaffold3019G00010 [Cucumis melo var. makuwa]

7.9e-78

76.26

Show/hide

Query:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD
        +I + GEEDFLITKPVSTLYVEA E+ALECSFRSF+I HATIME  VDEV+KPHK K+EVMT+R+M  G  SLN++LE LLK PSN+GRFGLGYKPS+ D
Subjt:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD

Query:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR
        KIRLQEE KKKRLAK +M+EFDP +K IP LYD FKSAGISYSSH+S+ K  LLTKMESL +AAVA E SFEG+ VYACPPDFELNNWD VDLPTFSR
Subjt:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]

6.0e-78

75.76

Show/hide

Query:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD
        +I + GEEDFLITK VST YVEA E+ALECSFRSF+I HAT+ME  VDEV+KPHK K+EVMTTR+M  G  SLN++LE LLK+PSN+GRFGLGYKPS+ D
Subjt:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD

Query:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR
        KIRLQE+KKKKRLAK +M+EFDP +K IP LYD FKSAGISYSSH+S+ KD LLTKM SL +AAVA E SFEG+TVYACPPDFELNNWD VDLPTFSR
Subjt:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1W2 Retrotrans_gag domain-containing protein

2.9e-78

75.76

Show/hide

Query:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD
        +I + GEEDFLITKPVST YVEA E+ALECSF SF+I HAT+ME  VDEV+KPHK K+EVMTTR+M  G  SLN++LE LLK+PSN+GRFGLGYKPS+ D
Subjt:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD

Query:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR
        KIRLQE+KKKKRL K +M+EFDP +K IP LYDTFKSAGISYSS +S+ KD LLTKMESL +AAVA E SFEG+TVYACPPDFELNNWD VDLPTFSR
Subjt:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR

A0A5A7T5W2 Retrotrans_gag domain-containing protein

2.0e-79

76.77

Show/hide

Query:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD
        +I + GEEDFLITKPVST YVEA E+ALECSFRSF+I HAT+ME  VDEV+KPHK K+EVMTTR+M  G  SLN++LE LLK+PSN+GRFGLGYKPS+ D
Subjt:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD

Query:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR
        KIRLQEEKKKKRLAK +M+EFDP +K IP LYDTFKSAGISYSS +S+ KD LLTKMESL +A VA E SFEG+TVYACPPDFELNNWD VDLPTFSR
Subjt:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

2.0e-79

76.77

Show/hide

Query:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD
        +I + GEEDFLITKPVST YVEA+E+ALECSFRSF+I HAT+ME  VDEV+KPHK K+EVMTTR+M  G  SLN++LE LLK+PSN+GRFGLGYKPS+ D
Subjt:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD

Query:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR
        KIRLQE KKKKRLAK +M+EFDP +K IP LYDTFKSAGISYSS +S+ KD LLTKMESL +AAVA E SFEG+TVYACPPDFELNNWD VDLPTFSR
Subjt:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR

A0A5D3C117 Uncharacterized protein

3.8e-78

76.26

Show/hide

Query:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD
        +I + GEEDFLITKPVSTLYVEA E+ALECSFRSF+I HATIME  VDEV+KPHK K+EVMT+R+M  G  SLN++LE LLK PSN+GRFGLGYKPS+ D
Subjt:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD

Query:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR
        KIRLQEE KKKRLAK +M+EFDP +K IP LYD FKSAGISYSSH+S+ K  LLTKMESL +AAVA E SFEG+ VYACPPDFELNNWD VDLPTFSR
Subjt:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR

A0A5D3DEB3 Retrotrans_gag domain-containing protein

2.9e-78

75.76

Show/hide

Query:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD
        +I + GEEDFLITK VST YVEA E+ALECSFRSF+I HAT+ME  VDEV+KPHK K+EVMTTR+M  G  SLN++LE LLK+PSN+GRFGLGYKPS+ D
Subjt:  MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDD

Query:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR
        KIRLQE+KKKKRLAK +M+EFDP +K IP LYD FKSAGISYSSH+S+ KD LLTKM SL +AAVA E SFEG+TVYACPPDFELNNWD VDLPTFSR
Subjt:  KIRLQEEKKKKRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTAGTCTATGGGGAGAGGAAGATTTCTTGATAACAAAACCTGTCTCAACCCTATATGTTGAAGCAGTAGAGAAAGCATTAGAGTGTTCTTTTCGCTCTTTCAAAAT
TGTCCATGCAACTATAATGGAGGAGGCTGTAGATGAAGTGGTAAAGCCACACAAGCCTAAAATTGAAGTTATGACCACTAGGATGATGAAAGATGGAAGACTTTCTTTGA
ATCAAAGCTTAGAGATACTTTTAAAAATGCCAAGCAACGAAGGGAGATTTGGTTTGGGCTATAAGCCATCTGTAGATGATAAGATTAGGCTTCAAGAAGAAAAGAAAAAA
AAGCGTTTGGCAAAGCAAGATATGAAGGAGTTTGATCCAGGTCTAAAATTTATACCAACGTTGTACGATACTTTCAAGAGTGCTGGTATAAGTTACTCATCACATGACTC
TAATTCGAAGGATTGTCTGTTAACGAAGATGGAGAGTTTATTGATTGCAGCAGTGGCACCAGAAACATCATTTGAAGGAGACACAGTTTATGCCTGTCCACCTGATTTCG
AGCTTAACAATTGGGATATTGTAGATCTACCTACATTTTCAAGAACAATATTCATAAGAATGAAGATGTTAGTAATCCCAATTCTACCCTTGATAGCTCAATATACACTA
TGGAATCTAACAAGGAAAGAGATGATGAAGATGTCGTGGGAGTATCCTCAGAATTGTTAA

mRNA sequence

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Protein sequence

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MISLWGEEDFLITKPVSTLYVEAVEKALECSFRSFKIVHATIMEEAVDEVVKPHKPKIEVMTTRMMKDGRLSLNQSLEILLKMPSNEGRFGLGYKPSVDDKIRLQEEKKK
KRLAKQDMKEFDPGLKFIPTLYDTFKSAGISYSSHDSNSKDCLLTKMESLLIAAVAPETSFEGDTVYACPPDFELNNWDIVDLPTFSRTIFIRMKMLVIPILPLIAQYTL
WNLTRKEMMKMSWEYPQNC

PI0008778 (gene) of Melon (PI 482460) v1 genome