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PI0008782 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008782
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionprotein RADIALIS-like 4
Genome locationchr03:1884442..1885732
RNA-Seq ExpressionPI0008782
SyntenyPI0008782
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065228.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]1.2e-4396.77Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQR
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR

XP_004152694.1 protein RADIALIS-like 4 [Cucumis sativus]6.1e-4898.02Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]6.1e-4897.03Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]1.0e-4288.12Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]4.4e-4696.04Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPI  NGS+Y DEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein3.0e-4898.02Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A1S3BBS2 protein RADIALIS-like 43.0e-4897.03Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A5A7VC75 Protein RADIALIS-like 45.8e-4496.77Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQR
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR

A0A6J1HFA3 protein RADIALIS-like 44.9e-4388.12Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1K2Q1 protein RADIALIS-like 44.9e-4388.12Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.2e-2457.28Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNL
        MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++L+QD+  IE+G VP PNY+      NG +  +E+R M+N+
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNL

Query:  KLQ
        +LQ
Subjt:  KLQ

Q1A173 Protein RADIALIS-like 61.8e-2662.77Show/hide
Query:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL
        +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N  S+ D + R MKNLK+
Subjt:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL

Q58FS3 Transcription factor RADIALIS6.0e-2254.26Show/hide
Query:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ
        S+  S   W+ K+NK FE AL +Y +DTPDRW  VARAV G+T EEVK+HY+IL++D+ +IESGKVP PNY+     G+M  DE+R  +NLK++
Subjt:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ

Q8GW75 Protein RADIALIS-like 55.2e-2660.58Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKN
        MASSS     SSSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDIL++DLM+IE   VPLP YK +   + +  + D + RLMKN
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKN

Query:  LKLQ
        +++Q
Subjt:  LKLQ

Q9SIJ5 Protein RADIALIS-like 21.4e-2356.73Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKN
        MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+L++D+  IE+G VP P+YK    N   G + D+E+R M++
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKN

Query:  LKLQ
        +KLQ
Subjt:  LKLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.7e-2760.58Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKN
        MASSS     SSSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDIL++DLM+IE   VPLP YK +   + +  + D + RLMKN
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKN

Query:  LKLQ
        +++Q
Subjt:  LKLQ

AT1G75250.1 RAD-like 62.7e-2562.65Show/hide
Query:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDD
        +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N    +D
Subjt:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDD

AT1G75250.2 RAD-like 61.3e-2762.77Show/hide
Query:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL
        +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N  S+ D + R MKNLK+
Subjt:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL

AT2G21650.1 Homeodomain-like superfamily protein1.0e-2456.73Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKN
        MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+L++D+  IE+G VP P+YK    N   G + D+E+R M++
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKN

Query:  LKLQ
        +KLQ
Subjt:  LKLQ

AT4G39250.1 RAD-like 11.6e-2557.28Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNL
        MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++L+QD+  IE+G VP PNY+      NG +  +E+R M+N+
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNL

Query:  KLQ
        +LQ
Subjt:  KLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCGAGCTCTTTTAAATCTTCAGGCAGTTCTAGCTCATCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCCGAGGACACGCCAGA
TAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTC
CTCTTCCTAACTACAAGCCCATTGCTCCGAACGGTTCAATGTATGATGATGAGCAAAGGCTCATGAAGAATCTAAAGCTCCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCGAGCTCTTTTAAATCTTCAGGCAGTTCTAGCTCATCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCCGAGGACACGCCAGA
TAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTC
CTCTTCCTAACTACAAGCCCATTGCTCCGAACGGTTCAATGTATGATGATGAGCAAAGGCTCATGAAGAATCTAAAGCTCCAATAA
Protein sequenceShow/hide protein sequence
MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ