; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0008788 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008788
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr04:15142411..15143649
RNA-Seq ExpressionPI0008788
SyntenyPI0008788
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-6356.54Show/hide
Query:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
        GFGWNDE KCI+ EK +++ W  SHPAAKGLL K F HYD+L YVF +DRATGGR E+F ++GSN PPG++ F      D +   MY+ GL+MSPDD+M 
Subjt:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG

Query:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD
        TR+ R+SE R  SSGSKRKR G A ++ +I+ +A+EY N+QL  IAEWP  QRQDA+ TR E+V+QL+ IPEL+ +DR R M I+MR++DDMKAF+++ D
Subjt:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD

Query:  ELKLDYCTVILQDD
         +K  YC++ILQ++
Subjt:  ELKLDYCTVILQDD

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]3.6e-6455.14Show/hide
Query:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
        GFGWNDE KCI+ EK +++ WV+SHPAAKGLL K FPHYD+L YVF +D ATGGR E+F +VGSN P G++ F     +D +   MY++GL+MSPD++MG
Subjt:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG

Query:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD
        TR+ R+SE R  SSGSK+KRGG  +++ +I+ +A+EY N+QL  IAEW   QRQDA+ TR EVVRQL+ IPEL+ +DR R M I++ +++DMKAF+++ D
Subjt:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD

Query:  ELKLDYCTVILQDD
         +K  YC++IL+++
Subjt:  ELKLDYCTVILQDD

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-6557.94Show/hide
Query:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
        GFGWNDE KCII EK +++ WVKSHPAAKGLL K F HYD+L YVF +DRATGGR E+F ++GSN P G++ F      D + P MY+ GL+MSPDD+M 
Subjt:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG

Query:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD
        TR+ R+SE R  SSGSK KR G A ++ +I+ +A+EY N+QL  IAEWP  QRQDA+ TR E+VRQL+ IPEL+ +DR R M I+MR++DDMKAF+ + D
Subjt:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD

Query:  ELKLDYCTVILQDD
         +K  YC++ILQ++
Subjt:  ELKLDYCTVILQDD

KAA0063726.1 retrotransposon protein [Cucumis melo var. makuwa]9.4e-6558.88Show/hide
Query:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
        GFGWNDE KCI+ EK +++ WVKSHPAAKGLL K F HYD+L YVF +DRATG RVE+F NV SN P  ++ F      D + P MY+QGL+MSPDD+MG
Subjt:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG

Query:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD
        TR+ R+SE R  SSGSKRKR G A ++ +I+ +A+EY N+QL  IAEWP  QRQ+AS TR EVVRQL+ IPEL  +DR R M I+M ++DDMKAF+D+ D
Subjt:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD

Query:  ELKLDYCTVILQDD
         +K  Y  +ILQ++
Subjt:  ELKLDYCTVILQDD

KAA0065737.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-6356.54Show/hide
Query:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
        GFGWNDE KCI+ EK +++ W  SHPAAKGLL K F HYD+L YVF +DRATGGR E+F ++GSN PPG++ F      D + P MY+ GL+MSPDD+M 
Subjt:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG

Query:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD
        TR+ R+SE R  SS SKRKR G A ++ +I+ +A+EY N+QL  IAEWP  QRQDA+ TR ++VRQL+ IPEL+ +DR R M I+MR++DDMKAF+++ D
Subjt:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD

Query:  ELKLDYCTVILQDD
         +K  YC++ILQ++
Subjt:  ELKLDYCTVILQDD

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein8.6e-6456.54Show/hide
Query:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
        GFGWNDE KCI+ EK +++ W  SHPAAKGLL K F HYD+L YVF +DRATGGR E+F ++GSN PPG++ F      D +   MY+ GL+MSPDD+M 
Subjt:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG

Query:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD
        TR+ R+SE R  SSGSKRKR G A ++ +I+ +A+EY N+QL  IAEWP  QRQDA+ TR E+V+QL+ IPEL+ +DR R M I+MR++DDMKAF+++ D
Subjt:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD

Query:  ELKLDYCTVILQDD
         +K  YC++ILQ++
Subjt:  ELKLDYCTVILQDD

A0A5A7TZA5 Retrotransposon protein1.7e-6455.14Show/hide
Query:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
        GFGWNDE KCI+ EK +++ WV+SHPAAKGLL K FPHYD+L YVF +D ATGGR E+F +VGSN P G++ F     +D +   MY++GL+MSPD++MG
Subjt:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG

Query:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD
        TR+ R+SE R  SSGSK+KRGG  +++ +I+ +A+EY N+QL  IAEW   QRQDA+ TR EVVRQL+ IPEL+ +DR R M I++ +++DMKAF+++ D
Subjt:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD

Query:  ELKLDYCTVILQDD
         +K  YC++IL+++
Subjt:  ELKLDYCTVILQDD

A0A5A7U4M2 Retrotransposon protein9.2e-6657.94Show/hide
Query:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
        GFGWNDE KCII EK +++ WVKSHPAAKGLL K F HYD+L YVF +DRATGGR E+F ++GSN P G++ F      D + P MY+ GL+MSPDD+M 
Subjt:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG

Query:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD
        TR+ R+SE R  SSGSK KR G A ++ +I+ +A+EY N+QL  IAEWP  QRQDA+ TR E+VRQL+ IPEL+ +DR R M I+MR++DDMKAF+ + D
Subjt:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD

Query:  ELKLDYCTVILQDD
         +K  YC++ILQ++
Subjt:  ELKLDYCTVILQDD

A0A5A7VBC5 Retrotransposon protein4.6e-6558.88Show/hide
Query:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
        GFGWNDE KCI+ EK +++ WVKSHPAAKGLL K F HYD+L YVF +DRATG RVE+F NV SN P  ++ F      D + P MY+QGL+MSPDD+MG
Subjt:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG

Query:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD
        TR+ R+SE R  SSGSKRKR G A ++ +I+ +A+EY N+QL  IAEWP  QRQ+AS TR EVVRQL+ IPEL  +DR R M I+M ++DDMKAF+D+ D
Subjt:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD

Query:  ELKLDYCTVILQDD
         +K  Y  +ILQ++
Subjt:  ELKLDYCTVILQDD

A0A5A7VF53 Retrotransposon protein5.0e-6456.54Show/hide
Query:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
        GFGWNDE KCI+ EK +++ W  SHPAAKGLL K F HYD+L YVF +DRATGGR E+F ++GSN PPG++ F      D + P MY+ GL+MSPDD+M 
Subjt:  GFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG

Query:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD
        TR+ R+SE R  SS SKRKR G A ++ +I+ +A+EY N+QL  IAEWP  QRQDA+ TR ++VRQL+ IPEL+ +DR R M I+MR++DDMKAF+++ D
Subjt:  TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILD

Query:  ELKLDYCTVILQDD
         +K  YC++ILQ++
Subjt:  ELKLDYCTVILQDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein4.4e-0432Show/hide
Query:  LRNHGFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVF
        L+  GF W++    I  +  +++S++K HP A+    K  P Y+DL  +F
Subjt:  LRNHGFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVF

AT2G24960.2 unknown protein3.6e-0626.32Show/hide
Query:  LRNHGFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATG
        L  +GF W+     +I + +++ +++++HP A+    K  P Y +LC++F ++ + G
Subjt:  LRNHGFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATG

AT4G02210.1 unknown protein9.5e-0734.04Show/hide
Query:  LRNHGFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLC
        LR+ GF W++E + +  + N+++ ++K+H  A+  + +P P+Y DLC
Subjt:  LRNHGFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLC

AT4G02210.2 unknown protein9.5e-0734.04Show/hide
Query:  LRNHGFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLC
        LR+ GF W++E + +  + N+++ ++K+H  A+  + +P P+Y DLC
Subjt:  LRNHGFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAGTGATTGGGAGTTGCGTAATCATGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGTCGAGAAAAACTTGTATGAGAGTTGGGTGAAGAGTCATCCAGC
CGCAAAAGGCCTCCTAAAAAAACCCTTTCCCCACTACGACGACCTTTGCTACGTCTTCAGAAGAGATCGTGCAACAGGAGGTCGAGTTGAAACCTTCGGCAATGTTGGGT
CGAACGTGCCTCCAGGGTTCGAAAGATTTCCCCACTATAACGGGAACGATATAGAGATCCCGACGATGTACAATCAAGGCCTGGACATGTCACCTGACGACATAATGGGT
ACACGATCGATTCGTATGTCTGAGGCTAGGGTTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCAGAAATCATTCACAGTGCCATGGAATA
TACTAATGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGGCAAGATGCAAGCATGACACGTGCGGAAGTCGTTAGACAACTACAGGGAATCCCGGAGCTGA
GTCGACTGGATAGGGTTCGTTGTATGTGCATAATGATGCGTAGCATGGATGACATGAAAGCATTTATAGACATCCTAGACGAGCTTAAGTTGGATTACTGCACGGTCATA
CTCCAAGATGACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAGTGATTGGGAGTTGCGTAATCATGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGTCGAGAAAAACTTGTATGAGAGTTGGGTGAAGAGTCATCCAGC
CGCAAAAGGCCTCCTAAAAAAACCCTTTCCCCACTACGACGACCTTTGCTACGTCTTCAGAAGAGATCGTGCAACAGGAGGTCGAGTTGAAACCTTCGGCAATGTTGGGT
CGAACGTGCCTCCAGGGTTCGAAAGATTTCCCCACTATAACGGGAACGATATAGAGATCCCGACGATGTACAATCAAGGCCTGGACATGTCACCTGACGACATAATGGGT
ACACGATCGATTCGTATGTCTGAGGCTAGGGTTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCAGAAATCATTCACAGTGCCATGGAATA
TACTAATGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGGCAAGATGCAAGCATGACACGTGCGGAAGTCGTTAGACAACTACAGGGAATCCCGGAGCTGA
GTCGACTGGATAGGGTTCGTTGTATGTGCATAATGATGCGTAGCATGGATGACATGAAAGCATTTATAGACATCCTAGACGAGCTTAAGTTGGATTACTGCACGGTCATA
CTCCAAGATGACGCTTGA
Protein sequenceShow/hide protein sequence
MFSDWELRNHGFGWNDELKCIIVEKNLYESWVKSHPAAKGLLKKPFPHYDDLCYVFRRDRATGGRVETFGNVGSNVPPGFERFPHYNGNDIEIPTMYNQGLDMSPDDIMG
TRSIRMSEARVGSSGSKRKRGGQALEAAEIIHSAMEYTNDQLKAIAEWPKEQRQDASMTRAEVVRQLQGIPELSRLDRVRCMCIMMRSMDDMKAFIDILDELKLDYCTVI
LQDDA