; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0008792 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008792
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:11508659..11509952
RNA-Seq ExpressionPI0008792
SyntenyPI0008792
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-4281.98Show/hide
Query:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR
        N V+A AR A+ADKTP EARELI RMAENSQ+FGNRASELDNSLTK+VSELKSQMLNMTTLLTSFVQG  LKVTKC VCGLVG+PNDKCP + +DVN +R
Subjt:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR

Query:  MYDPHGNTYNL
         YDPHGNTYNL
Subjt:  MYDPHGNTYNL

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-4283.64Show/hide
Query:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR
        NTV+AVA  A+ADK PTEARELIS+MAENSQSF NRASELDNSLTK+VSELKSQMLNMTTLLTSFVQG  LKVTKC VCGLVGHPNDKCP++ +DVN +R
Subjt:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR

Query:  MYDPHGNTYN
         YDPHGNTYN
Subjt:  MYDPHGNTYN

KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-4181.82Show/hide
Query:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR
        NTV+     A+ADKTPTEARELISRMAENSQSFGNRAS+LDNSLTK+VSELKSQMLNMTTLLTSFVQG  LKVTKC VCGLVGHPNDKCP++ +DVN +R
Subjt:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR

Query:  MYDPHGNTYN
         YDPHGNT N
Subjt:  MYDPHGNTYN

KAA0062012.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-4176.27Show/hide
Query:  IRAFCKFANTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDL
        ++ +  +   V+AVA  A+ADKTPT+A ELISRMAENSQSFGNRA ELDNSLTK+VSELKSQMLNMTTLLTSFVQG  LKVTKC VCGLVGHPNDKCP++
Subjt:  IRAFCKFANTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDL

Query:  AKDVNAIRMYDPHGNTYN
         +DVN +R YDPHGNTYN
Subjt:  AKDVNAIRMYDPHGNTYN

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-4180.18Show/hide
Query:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR
        NTV+AVA RA+ADKTPTEA ELISRMAEN QSFGNRAS+L+N LTK+VSELKS+MLNMTTLLTSFVQG   KVTKC VCGLVGHPNDKCP++ +D+N +R
Subjt:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR

Query:  MYDPHGNTYNL
         YDPHGNTYNL
Subjt:  MYDPHGNTYNL

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein3.9e-4281.98Show/hide
Query:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR
        N V+A AR A+ADKTP EARELI RMAENSQ+FGNRASELDNSLTK+VSELKSQMLNMTTLLTSFVQG  LKVTKC VCGLVG+PNDKCP + +DVN +R
Subjt:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR

Query:  MYDPHGNTYNL
         YDPHGNTYNL
Subjt:  MYDPHGNTYNL

A0A5A7ULU1 Retrotransposon gag protein6.7e-4281.82Show/hide
Query:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR
        NTV+     A+ADKTPTEARELISRMAENSQSFGNRAS+LDNSLTK+VSELKSQMLNMTTLLTSFVQG  LKVTKC VCGLVGHPNDKCP++ +DVN +R
Subjt:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR

Query:  MYDPHGNTYN
         YDPHGNT N
Subjt:  MYDPHGNTYN

A0A5A7V1C6 Retrotransposon gag protein6.7e-4276.27Show/hide
Query:  IRAFCKFANTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDL
        ++ +  +   V+AVA  A+ADKTPT+A ELISRMAENSQSFGNRA ELDNSLTK+VSELKSQMLNMTTLLTSFVQG  LKVTKC VCGLVGHPNDKCP++
Subjt:  IRAFCKFANTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDL

Query:  AKDVNAIRMYDPHGNTYN
         +DVN +R YDPHGNTYN
Subjt:  AKDVNAIRMYDPHGNTYN

A0A5D3CFE7 Retrotransposon gag protein8.7e-4280.18Show/hide
Query:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR
        NTV+AVA RA+ADKTPTEA ELISRMAEN QSFGNRAS+L+N LTK+VSELKS+MLNMTTLLTSFVQG   KVTKC VCGLVGHPNDKCP++ +D+N +R
Subjt:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR

Query:  MYDPHGNTYNL
         YDPHGNTYNL
Subjt:  MYDPHGNTYNL

A0A5D3CRR8 Retrotransposon gag protein7.9e-4383.64Show/hide
Query:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR
        NTV+AVA  A+ADK PTEARELIS+MAENSQSF NRASELDNSLTK+VSELKSQMLNMTTLLTSFVQG  LKVTKC VCGLVGHPNDKCP++ +DVN +R
Subjt:  NTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMTTLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIR

Query:  MYDPHGNTYN
         YDPHGNTYN
Subjt:  MYDPHGNTYN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTTTGCAGAAAGGGTAGCACACGAGCTTGGGAGATCAGAGCGCGGGATGAAGTGCAAGGTGAAGCGTTGGGTGCTAAGGTGGGCTGCATCGTGCACTGCGATGCG
AAATGGGCATCTGAGAAGGATAAGGGCATTCTGCAAGTTTGCGAACACGGTTAATGCGGTGGCGAGAAGAGCTGTAGCTGACAAAACTCCCACCGAAGCAAGGGAGCTCA
TCTCTAGAATGGCGGAGAATTCTCAAAGTTTTGGAAATAGAGCATCGGAACTTGACAACTCTCTAACTAAAAAGGTAAGTGAATTAAAATCTCAAATGTTAAATATGACA
ACTCTTCTTACTTCTTTTGTGCAAGGAGGTACTCTCAAAGTAACCAAGTGTGAAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGTCCCGACTTGGCCAAGGATGT
GAATGCTATTAGGATGTATGACCCCCATGGTAATACATACAATTTGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTTTGCAGAAAGGGTAGCACACGAGCTTGGGAGATCAGAGCGCGGGATGAAGTGCAAGGTGAAGCGTTGGGTGCTAAGGTGGGCTGCATCGTGCACTGCGATGCG
AAATGGGCATCTGAGAAGGATAAGGGCATTCTGCAAGTTTGCGAACACGGTTAATGCGGTGGCGAGAAGAGCTGTAGCTGACAAAACTCCCACCGAAGCAAGGGAGCTCA
TCTCTAGAATGGCGGAGAATTCTCAAAGTTTTGGAAATAGAGCATCGGAACTTGACAACTCTCTAACTAAAAAGGTAAGTGAATTAAAATCTCAAATGTTAAATATGACA
ACTCTTCTTACTTCTTTTGTGCAAGGAGGTACTCTCAAAGTAACCAAGTGTGAAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGTCCCGACTTGGCCAAGGATGT
GAATGCTATTAGGATGTATGACCCCCATGGTAATACATACAATTTGGAATGA
Protein sequenceShow/hide protein sequence
MSFAERVAHELGRSERGMKCKVKRWVLRWAASCTAMRNGHLRRIRAFCKFANTVNAVARRAVADKTPTEARELISRMAENSQSFGNRASELDNSLTKKVSELKSQMLNMT
TLLTSFVQGGTLKVTKCEVCGLVGHPNDKCPDLAKDVNAIRMYDPHGNTYNLE