; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0008827 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008827
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr01:8011586..8011975
RNA-Seq ExpressionPI0008827
SyntenyPI0008827
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043367.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.6e-3465.62Show/hide
Query:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL
        MTSDK LFKDLD SFKSKVK GN           VS +S  GTK I +VLF+ EIDQ+LL++ QL+EK FKVLFEEGKCLI  SNG+ELFKI  QHKSF 
Subjt:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL

Query:  LDPLEKEQIAFKCQVNDPELWHKRLEHF
        L+ LE+EQ+AFKCQVND + WHKRL  F
Subjt:  LDPLEKEQIAFKCQVNDPELWHKRLEHF

TYJ98110.1 putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa]8.5e-3364.06Show/hide
Query:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL
        MTSDK LFKDLD SFKS+VK GN           VS +S  GTK I +VLF+ EIDQ+LL++ QL+EK FKVLFEEGKCLI  SNG+ELFKI  Q KSF 
Subjt:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL

Query:  LDPLEKEQIAFKCQVNDPELWHKRLEHF
        L+ LE+EQ+AFKCQVND + WHKRL  F
Subjt:  LDPLEKEQIAFKCQVNDPELWHKRLEHF

XP_022158688.1 uncharacterized protein LOC111025149 [Momordica charantia]2.0e-3467.44Show/hide
Query:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL
        M SDK LFKDLD+SFKS+VK GN            SIES VGTK I EVLFV  I Q+LLS+ QL+EKGFKVLFE  KCLI  SNG+E FKIK QHKSF 
Subjt:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL

Query:  LDPLEKEQIAFKCQVNDPELWHKRLEHFH
        LDP+EK+QI  KCQVND EL HKRL HFH
Subjt:  LDPLEKEQIAFKCQVNDPELWHKRLEHFH

XP_038885771.1 uncharacterized protein LOC120076063 [Benincasa hispida]1.8e-3573.33Show/hide
Query:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL
        MTSDK LFKDLDKSFKS+VK GN           VSIES V TK I EVLFV EIDQ+LLS+ QL+EKGFKVLFE+GKCLI  SNG++LFKIK QH  FL
Subjt:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL

Query:  LDPLEKEQIAFKCQVNDPEL
        LDPLEKEQIAFKCQVND EL
Subjt:  LDPLEKEQIAFKCQVNDPEL

XP_038890984.1 uncharacterized protein LOC120080400 [Benincasa hispida]3.1e-3569.92Show/hide
Query:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL
        MTSDK LFKDLDKSFKS++K GN           VSIES  GTK I +VLFV EIDQ+LLS+ QL+EKGFKVLFEEGKCLIFYSNG+EL KIK QHKSF 
Subjt:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL

Query:  LDPLEKEQIAFKCQVNDPELWHK
        LDPLEK+QI FKCQV   +L  K
Subjt:  LDPLEKEQIAFKCQVNDPELWHK

TrEMBL top hitse value%identityAlignment
A0A5A7TNI4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-3465.62Show/hide
Query:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL
        MTSDK LFKDLD SFKSKVK GN           VS +S  GTK I +VLF+ EIDQ+LL++ QL+EK FKVLFEEGKCLI  SNG+ELFKI  QHKSF 
Subjt:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL

Query:  LDPLEKEQIAFKCQVNDPELWHKRLEHF
        L+ LE+EQ+AFKCQVND + WHKRL  F
Subjt:  LDPLEKEQIAFKCQVNDPELWHKRLEHF

A0A5B6WLL2 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-2860.5Show/hide
Query:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL
        MT  K LFKDLD+S KS V+ GN           V IES  GTKFI +VLFV EIDQ+LLS+ QL+E GFKV+FEEG CLI Y   + LF+IK Q+KSF 
Subjt:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL

Query:  LDPLEKEQIAFKCQVNDPE
        L+PLE+EQ+AFKCQV+D E
Subjt:  LDPLEKEQIAFKCQVNDPE

A0A5D3BE46 Putative transposon Ty5-1 protein YCL075W family4.1e-3364.06Show/hide
Query:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL
        MTSDK LFKDLD SFKS+VK GN           VS +S  GTK I +VLF+ EIDQ+LL++ QL+EK FKVLFEEGKCLI  SNG+ELFKI  Q KSF 
Subjt:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL

Query:  LDPLEKEQIAFKCQVNDPELWHKRLEHF
        L+ LE+EQ+AFKCQVND + WHKRL  F
Subjt:  LDPLEKEQIAFKCQVNDPELWHKRLEHF

A0A6J1DWT9 uncharacterized protein LOC1110251499.8e-3567.44Show/hide
Query:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL
        M SDK LFKDLD+SFKS+VK GN            SIES VGTK I EVLFV  I Q+LLS+ QL+EKGFKVLFE  KCLI  SNG+E FKIK QHKSF 
Subjt:  MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFL

Query:  LDPLEKEQIAFKCQVNDPELWHKRLEHFH
        LDP+EK+QI  KCQVND EL HKRL HFH
Subjt:  LDPLEKEQIAFKCQVNDPELWHKRLEHFH

A5ARY3 Uncharacterized protein1.3e-2655.08Show/hide
Query:  MTSDKVLFKDLDKSFKSKVKTGNVSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAF
        MT+D+ LFK+LDK+  SKVK GN   ES  G K+I +V++V +IDQ+LLS+ QLIEKGFKV+FE+  C+I    G ++FK+K + KSF L+ +E EQIAF
Subjt:  MTSDKVLFKDLDKSFKSKVKTGNVSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAF

Query:  KCQVNDPELWHKRLEHFH
           +++ ELWH+RLEHFH
Subjt:  KCQVNDPELWHKRLEHFH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGTGACAAAGTGTTGTTTAAGGACCTTGACAAGTCATTCAAGTCAAAGGTGAAGACAGGAAATGTGTCAATAGAGAGCTATGTTGGAACCAAGTTCATTATGGA
AGTGTTGTTTGTTTTTGAGATTGATCAAAGTTTGTTGAGCATTAGTCAATTAATAGAGAAGGGATTCAAAGTGTTGTTTGAAGAAGGAAAGTGCCTCATTTTTTATTCTA
ATGGGAGTGAGTTGTTCAAAATAAAGACGCAGCACAAGAGTTTCTTGTTGGATCCACTTGAGAAGGAGCAGATAGCTTTCAAGTGTCAAGTGAATGACCCTGAGTTATGG
CACAAGAGGTTAGAGCATTTTCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAGTGACAAAGTGTTGTTTAAGGACCTTGACAAGTCATTCAAGTCAAAGGTGAAGACAGGAAATGTGTCAATAGAGAGCTATGTTGGAACCAAGTTCATTATGGA
AGTGTTGTTTGTTTTTGAGATTGATCAAAGTTTGTTGAGCATTAGTCAATTAATAGAGAAGGGATTCAAAGTGTTGTTTGAAGAAGGAAAGTGCCTCATTTTTTATTCTA
ATGGGAGTGAGTTGTTCAAAATAAAGACGCAGCACAAGAGTTTCTTGTTGGATCCACTTGAGAAGGAGCAGATAGCTTTCAAGTGTCAAGTGAATGACCCTGAGTTATGG
CACAAGAGGTTAGAGCATTTTCATTAG
Protein sequenceShow/hide protein sequence
MTSDKVLFKDLDKSFKSKVKTGNVSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPELW
HKRLEHFH