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PI0008831 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008831
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:21430369..21430745
RNA-Seq ExpressionPI0008831
SyntenyPI0008831
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052859.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.8e-3475.22Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA--------KKKTTRSHRGDDLTNKDDHQRRQ
        MK+KESE VSDYIT+VQTVVNQLKRNG+T KD R+VEKILR LTNDF+NVVCAIE+ KNLEEMTI EL         +KK TR  RG  LTNKDDHQRRQ
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA--------KKKTTRSHRGDDLTNKDDHQRRQ

Query:  GNVCTTQSRKRTW
        GNVCTTQSRK+TW
Subjt:  GNVCTTQSRKRTW

KAA0060771.1 polyprotein [Cucumis melo var. makuwa]2.2e-2567.29Show/hide
Query:  SDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTI-----------DELAKKKTTRSHRGDDLTNKDDHQRRQGNVCTT
        +D + + Q VVNQLK NG+TLKDARVVEKI   LTNDFENVVCA EESKNLEEMT             E  +KKTTR   G  +TNKDDHQRRQGNVCTT
Subjt:  SDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTI-----------DELAKKKTTRSHRGDDLTNKDDHQRRQGNVCTT

Query:  QSRKRTW
        QSRKRTW
Subjt:  QSRKRTW

KAE8672005.1 hypothetical protein F3Y22_tig00111877pilonHSYRG00353 [Hibiscus syriacus]5.0e-2286.96Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA
        M MKESEGVSDYIT VQTVVNQLK NGETLKD+RVVEKILR LT+DFENVVCAIEESK+LEE+TID LA
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA

PKU61774.1 hypothetical protein MA16_Dca028474 [Dendrobium catenatum]1.1e-2185.51Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA
        MKMKESEGVSDYITRVQTVVNQLKRNGE L DARVVEKILR LTN+FENVVCAIEESK+L  +T++ELA
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA

XP_038878101.1 uncharacterized protein LOC120070273 isoform X4 [Benincasa hispida]1.3e-2288.41Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA
        MKMKESE VS YITRVQTVVNQLKRNGETL+DA+VVEKILR LTNDF+NVVCAIEESK LEEMTID+LA
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA

TrEMBL top hitse value%identityAlignment
A0A2I0VED6 Uncharacterized protein5.4e-2285.51Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA
        MKMKESEGVSDYITRVQTVVNQLKRNGE L DARVVEKILR LTN+FENVVCAIEESK+L  +T++ELA
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA

A0A5D3C1S7 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-3475.22Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA--------KKKTTRSHRGDDLTNKDDHQRRQ
        MK+KESE VSDYIT+VQTVVNQLKRNG+T KD R+VEKILR LTNDF+NVVCAIE+ KNLEEMTI EL         +KK TR  RG  LTNKDDHQRRQ
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA--------KKKTTRSHRGDDLTNKDDHQRRQ

Query:  GNVCTTQSRKRTW
        GNVCTTQSRK+TW
Subjt:  GNVCTTQSRKRTW

A0A5D3CND8 Polyprotein1.1e-2567.29Show/hide
Query:  SDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTI-----------DELAKKKTTRSHRGDDLTNKDDHQRRQGNVCTT
        +D + + Q VVNQLK NG+TLKDARVVEKI   LTNDFENVVCA EESKNLEEMT             E  +KKTTR   G  +TNKDDHQRRQGNVCTT
Subjt:  SDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTI-----------DELAKKKTTRSHRGDDLTNKDDHQRRQGNVCTT

Query:  QSRKRTW
        QSRKRTW
Subjt:  QSRKRTW

A0A6A2XY19 Integrase catalytic domain-containing protein2.4e-2286.96Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA
        M MKESEGVSDYIT VQTVVNQLK NGETLKD+RVVEKILR LT+DFENVVCAIEESK+LEE+TID LA
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELA

A0A6A3CTC0 Integrase catalytic domain-containing protein7.1e-2268.42Show/hide
Query:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELAKKKTTRSHRGDDLTNKDDHQRRQGNV
        MKMKESEGVSD ITRVQTVVNQLK  GETLKD+RVVEKILR LT+DFENVVCAIEESK+LEE+TID+LA        R     N+   +  Q NV
Subjt:  MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELAKKKTTRSHRGDDLTNKDDHQRRQGNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCGGGTTCAAACGGTGGTGAACCAACTTAAACGCAATGGAGAAACCCTCAAAGATGCCAGAGTTGTGGA
GAAAATCCTTCGACCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAAAAAAAAAGACAA
CAAGAAGTCATAGAGGAGACGACCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGCAGTTTCAGTCGCGA
CAAAGGTTATGGTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCGGGTTCAAACGGTGGTGAACCAACTTAAACGCAATGGAGAAACCCTCAAAGATGCCAGAGTTGTGGA
GAAAATCCTTCGACCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAAAAAAAAAGACAA
CAAGAAGTCATAGAGGAGACGACCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGCAGTTTCAGTCGCGA
CAAAGGTTATGGTCGTGA
Protein sequenceShow/hide protein sequence
MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELAKKKTTRSHRGDDLTNKDDHQRRQGNVCTTQSRKRTWQFQSR
QRLWS