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PI0008844 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008844
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr09:15086767..15087111
RNA-Seq ExpressionPI0008844
SyntenyPI0008844
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055559.1 uncharacterized protein E6C27_scaffold222G00360 [Cucumis melo var. makuwa]5.0e-3878.3Show/hide
Query:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR
        MA PL+SL    E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+P AKPPAKNAYRMAPPELAEL KQLDELL+AGFIRPAKAPYGA  FS+R
Subjt:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR

Query:  RRMEAY
        R+M  Y
Subjt:  RRMEAY

KAA0062527.1 uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa]5.9e-3981.37Show/hide
Query:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR
        MA PL+SL    E VPKDILCVLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA    ++
Subjt:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR

Query:  RR
        ++
Subjt:  RR

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-3677.45Show/hide
Query:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR
        MA PL S     E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA    +R
Subjt:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR

Query:  RR
        ++
Subjt:  RR

TYK01833.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-3682.98Show/hide
Query:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA
        MA PL+S     E VPK+I+ VLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA
Subjt:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA

TYK25834.1 uncharacterized protein E5676_scaffold436G00420 [Cucumis melo var. makuwa]1.2e-3676.42Show/hide
Query:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR
        MA PL+S     E VPK+I+ VLEKY DVM  SLPK+LPPRRMIDHEIEL+PGAK PAKNAYRMAPPELAELRKQLDELL+AGFIRPAKAPYG + FS+R
Subjt:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR

Query:  RRMEAY
        R+M  Y
Subjt:  RRMEAY

TrEMBL top hitse value%identityAlignment
A0A5A7UQ20 Uncharacterized protein2.4e-3878.3Show/hide
Query:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR
        MA PL+SL    E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+P AKPPAKNAYRMAPPELAEL KQLDELL+AGFIRPAKAPYGA  FS+R
Subjt:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR

Query:  RRMEAY
        R+M  Y
Subjt:  RRMEAY

A0A5A7V6G0 Retrotrans_gag domain-containing protein2.8e-3981.37Show/hide
Query:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR
        MA PL+SL    E VPKDILCVLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA    ++
Subjt:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR

Query:  RR
        ++
Subjt:  RR

A0A5D3BQ68 Reverse transcriptase2.2e-3682.98Show/hide
Query:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA
        MA PL+S     E VPK+I+ VLEKY+DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA
Subjt:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGA

A0A5D3C4R1 Reverse transcriptase2.9e-3677.45Show/hide
Query:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR
        MA PL S     E VPK+I+ VLEKY DVMP SLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRMAPPELAELRKQLDELL+AGFIRPAKAPYGA    +R
Subjt:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR

Query:  RR
        ++
Subjt:  RR

A0A5D3DQI8 Uncharacterized protein5.9e-3776.42Show/hide
Query:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR
        MA PL+S     E VPK+I+ VLEKY DVM  SLPK+LPPRRMIDHEIEL+PGAK PAKNAYRMAPPELAELRKQLDELL+AGFIRPAKAPYG + FS+R
Subjt:  MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKR

Query:  RRMEAY
        R+M  Y
Subjt:  RRMEAY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTCCGCTTGATTCACTAGGGACTCAGGAGGAAGTAGTTCCGAAAGACATTCTATGTGTCTTGGAGAAGTATAACGATGTGATGCCTGGTAGTTTGCCCAAGAC
TCTACCGCCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTACCGTATGGCACCACCCGAGTTGGCAGAACTTCGGA
AACAGTTAGATGAGTTGTTGAGTGCAGGATTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCGGTCCTTTTCCAAAAGAAGAAGGATGGAAGCTTACGTCTGTGCATCG
ACTATCGTGCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTCCGCTTGATTCACTAGGGACTCAGGAGGAAGTAGTTCCGAAAGACATTCTATGTGTCTTGGAGAAGTATAACGATGTGATGCCTGGTAGTTTGCCCAAGAC
TCTACCGCCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTACCGTATGGCACCACCCGAGTTGGCAGAACTTCGGA
AACAGTTAGATGAGTTGTTGAGTGCAGGATTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCGGTCCTTTTCCAAAAGAAGAAGGATGGAAGCTTACGTCTGTGCATCG
ACTATCGTGCATTGA
Protein sequenceShow/hide protein sequence
MATPLDSLGTQEEVVPKDILCVLEKYNDVMPGSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLSAGFIRPAKAPYGARSFSKRRRMEAYVCAS
TIVH