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PI0008865 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008865
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr08:4924332..4924833
RNA-Seq ExpressionPI0008865
SyntenyPI0008865
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046253.1 uncharacterized protein E6C27_scaffold284G00560 [Cucumis melo var. makuwa]1.2e-4770.86Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFD+R   S TQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAK A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA

Query:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDK
        +TCHITVEE  DSKE +K+ SQRSSVF RI  ST R SVFQR+S    +DK
Subjt:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDK

KAA0052361.1 uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa]4.2e-4869.93Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KI DER  FS TQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAK A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA

Query:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE
        +TCHITVEE  DS+E +K+ SQRSSVF RI  S  R SVFQR+S    +D N+
Subjt:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE

KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]3.2e-4869.28Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFDER   S TQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAK  
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA

Query:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE
        +TCHITVEE  DSKE +K+ SQRSSVF RI  S  R SVFQR+S    +D N+
Subjt:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]3.2e-4869.28Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFDER   S TQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAK  
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA

Query:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE
        +TCHITVEE  DSKE +K+ SQRSSVF RI  S  R SVFQR+S    +D N+
Subjt:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE

TYK18947.1 uncharacterized protein E5676_scaffold418G00310 [Cucumis melo var. makuwa]1.2e-4770.86Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFD+R   S TQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAK A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA

Query:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDK
        +TCHITVEE  DSKE +K+ SQRSSVF RI  ST R SVFQR+S    +DK
Subjt:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDK

TrEMBL top hitse value%identityAlignment
A0A5A7TRQ6 RNase H domain-containing protein5.9e-4870.86Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFD+R   S TQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAK A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA

Query:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDK
        +TCHITVEE  DSKE +K+ SQRSSVF RI  ST R SVFQR+S    +DK
Subjt:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDK

A0A5A7UFR3 RNase H domain-containing protein2.0e-4869.93Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KI DER  FS TQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAK A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA

Query:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE
        +TCHITVEE  DS+E +K+ SQRSSVF RI  S  R SVFQR+S    +D N+
Subjt:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE

A0A5A7V4F2 Reverse transcriptase domain-containing protein1.6e-4869.28Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFDER   S TQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAK  
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA

Query:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE
        +TCHITVEE  DSKE +K+ SQRSSVF RI  S  R SVFQR+S    +D N+
Subjt:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE

A0A5D3BTY1 Ribonuclease H1.6e-4869.28Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFDER   S TQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAK  
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA

Query:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE
        +TCHITVEE  DSKE +K+ SQRSSVF RI  S  R SVFQR+S    +D N+
Subjt:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNE

A0A5D3D5V8 RNase H domain-containing protein5.9e-4870.86Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFD+R   S TQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAK A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAA

Query:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDK
        +TCHITVEE  DSKE +K+ SQRSSVF RI  ST R SVFQR+S    +DK
Subjt:  DTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAAGGAGGGGCGAAAAGGATTGAAAAAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACGACGGAGGGATTCGATCCAAAAGCATATAAGTTGACGGCAAA
TGCGGGTTATGACTTTACAACCCGTACTGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGTTTTCTCTTACGCAAAGGAAGCTTCAAAAGCAAGGATATTTTATAC
CAAATTCAAGACTAGGAGTTGGGTATAAGTCTTCCGAGCCGGTTCGAATAACTGGTAAAGGAAAAGCAAAAGCTGCTGACACATGCCACATTACTGTTGAAGAATACAAC
GATTCTAAAGAAGACGAAAAAAATGAAAGTCAAAGAAGTTCTGTTTTTTATCGCATCACCTCCTCTACTGCACGCTCTTCAGTTTTCCAGAGGTTAAGTGTACCGACAAG
GGAGGACAAAAATGAAGGAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAAGGAGGGGCGAAAAGGATTGAAAAAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACGACGGAGGGATTCGATCCAAAAGCATATAAGTTGACGGCAAA
TGCGGGTTATGACTTTACAACCCGTACTGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGTTTTCTCTTACGCAAAGGAAGCTTCAAAAGCAAGGATATTTTATAC
CAAATTCAAGACTAGGAGTTGGGTATAAGTCTTCCGAGCCGGTTCGAATAACTGGTAAAGGAAAAGCAAAAGCTGCTGACACATGCCACATTACTGTTGAAGAATACAAC
GATTCTAAAGAAGACGAAAAAAATGAAAGTCAAAGAAGTTCTGTTTTTTATCGCATCACCTCCTCTACTGCACGCTCTTCAGTTTTCCAGAGGTTAAGTGTACCGACAAG
GGAGGACAAAAATGAAGGAGATTAA
Protein sequenceShow/hide protein sequence
MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKSKIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYN
DSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNEGD