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PI0008874 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008874
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr04:27445452..27445631
RNA-Seq ExpressionPI0008874
SyntenyPI0008874
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035181.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-0962.71Show/hide
Query:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE
        MSP++I G R+ Q+SE +  SSGSKRKRG  + ETVE++RS +E+ NDQLKAIA WLKE
Subjt:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE

KAA0060365.1 retrotransposon protein [Cucumis melo var. makuwa]9.2e-1271.43Show/hide
Query:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEW
        M P+DI+G+R  +SSE RTGSSGSKRK+GG  VE+VE+IRS MEY N QLKAIAEW
Subjt:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEW

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-1063.16Show/hide
Query:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWL
        M  +DI+G+R ++S+E RTGSSGSKRK+GG  VET+E+IR+ ME++ND+LKAI EWL
Subjt:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWL

KAA0063227.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-0961.02Show/hide
Query:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE
        MSP+++ G R+ Q+SE +  SSGSKRK+G  + ETVEVIRS +E+ NDQLKAIA W KE
Subjt:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE

TYK01364.1 retrotransposon protein [Cucumis melo var. makuwa]7.3e-0968.63Show/hide
Query:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLK
        MSP+DI G+R   SS+ R  S GSKRKRGG+  ETVE+IR+TMEYANDQLK
Subjt:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLK

TrEMBL top hitse value%identityAlignment
A0A5A7T0R2 Retrotransposon protein5.4e-1062.71Show/hide
Query:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE
        MSP++I G R+ Q+SE +  SSGSKRKRG  + ETVE++RS +E+ NDQLKAIA WLKE
Subjt:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE

A0A5A7V3C0 Retrotransposon protein4.5e-1271.43Show/hide
Query:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEW
        M P+DI+G+R  +SSE RTGSSGSKRK+GG  VE+VE+IRS MEY N QLKAIAEW
Subjt:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEW

A0A5A7V469 Retrotransposon protein1.1e-1063.16Show/hide
Query:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWL
        M  +DI+G+R ++S+E RTGSSGSKRK+GG  VET+E+IR+ ME++ND+LKAI EWL
Subjt:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWL

A0A5A7V8A4 Retrotransposon protein2.7e-0961.02Show/hide
Query:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE
        MSP+++ G R+ Q+SE +  SSGSKRK+G  + ETVEVIRS +E+ NDQLKAIA W KE
Subjt:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE

A0A5D3BQB5 Retrotransposon protein3.5e-0968.63Show/hide
Query:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLK
        MSP+DI G+R   SS+ R  S GSKRKRGG+  ETVE+IR+TMEYANDQLK
Subjt:  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCCGAGGACATAGTGGGATCACGATCTGAACAGTCGAGTGAGTGTAGGACGGGTTCGAGCGGATCGAAAAGGAAGCGGGGAGGCTATAACGTGGAAACTGTGGA
AGTCATTCGCAGCACCATGGAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCTGAAAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACCCGAGGACATAGTGGGATCACGATCTGAACAGTCGAGTGAGTGTAGGACGGGTTCGAGCGGATCGAAAAGGAAGCGGGGAGGCTATAACGTGGAAACTGTGGA
AGTCATTCGCAGCACCATGGAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCTGAAAGAATAA
Protein sequenceShow/hide protein sequence
MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE