; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0008890 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008890
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr07:19711365..19711853
RNA-Seq ExpressionPI0008890
SyntenyPI0008890
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041166.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.0e-6081.21Show/hide
Query:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC
        MGLR EYESVR ALLHRNPLPSLD AVQEILF EKR+GIVS + SDVAL TTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+GHIL++CPTRPP 
Subjt:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC

Query:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS
        P GHSHKPK S K+GSSSVV AATS DIT P S QL DLHDLLKQVISS
Subjt:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-5981.21Show/hide
Query:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC
        MGLR EYESVR ALLHRNPLPSLD AVQEILF EKR+GIVS + SDVAL TTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+GHIL++CPTRPP 
Subjt:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC

Query:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS
        P GHSHKPK S K+GSSSVV AAT SDIT P S QL DLHDLLKQVISS
Subjt:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-5981.21Show/hide
Query:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC
        MGLR EYESVR ALLHRNPLPSLD AVQEILF EKR+GIVS + SDVAL TTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+GHIL++CPTRPP 
Subjt:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC

Query:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS
        P GHSHKPK S K+GSSSVV AAT SDIT P S QL DLHDLLKQVISS
Subjt:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]2.0e-6181.88Show/hide
Query:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC
        MGLR EYESVR ALLHRNPLPSLD AVQEILF EKR+GIVS + SDVAL TTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+GHIL++CPTRPP 
Subjt:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC

Query:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS
        P GHSHKPK S K+GSSSVV AATSSDIT P S QL DLHDLLKQVISS
Subjt:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]8.6e-6078.67Show/hide
Query:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC
        MGLR EYESVR ALLHRNPLPSLD A+QEILF E R+GIVS + SDVAL TTHSRS NES FCKNCKLHGHKFANCPTIECRYCHK+GHIL++CPTRPP 
Subjt:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC

Query:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISSN
        P G  +KPKSS+K  S  +V AAT SDITTP +FQL DLHDLLKQVISSN
Subjt:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISSN

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882009.9e-6281.88Show/hide
Query:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC
        MGLR EYESVR ALLHRNPLPSLD AVQEILF EKR+GIVS + SDVAL TTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+GHIL++CPTRPP 
Subjt:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC

Query:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS
        P GHSHKPK S K+GSSSVV AATSSDIT P S QL DLHDLLKQVISS
Subjt:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-5980.54Show/hide
Query:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC
        MGLR EYE VR ALLHRNPLPSLD AVQEILF EKR+GIVS + SDVAL TTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+GHIL++CPTRPP 
Subjt:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC

Query:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS
        P GHSHKPK S K+GSSSVV AAT SDIT P S QL DLHDLLKQVISS
Subjt:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS

A0A5A7TGJ6 Putative mitochondrial protein4.9e-6181.21Show/hide
Query:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC
        MGLR EYESVR ALLHRNPLPSLD AVQEILF EKR+GIVS + SDVAL TTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+GHIL++CPTRPP 
Subjt:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC

Query:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS
        P GHSHKPK S K+GSSSVV AATS DIT P S QL DLHDLLKQVISS
Subjt:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-6081.21Show/hide
Query:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC
        MGLR EYESVR ALLHRNPLPSLD AVQEILF EKR+GIVS + SDVAL TTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+GHIL++CPTRPP 
Subjt:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC

Query:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS
        P GHSHKPK S K+GSSSVV AAT SDIT P S QL DLHDLLKQVISS
Subjt:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-6081.21Show/hide
Query:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC
        MGLR EYESVR ALLHRNPLPSLD AVQEILF EKR+GIVS + SDVAL TTH R  NE+ FCKNCKLHGHKFANCPTIECRYCHK+GHIL++CPTRPP 
Subjt:  MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPC

Query:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS
        P GHSHKPK S K+GSSSVV AAT SDIT P S QL DLHDLLKQVISS
Subjt:  PSGHSHKPKSSSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACTTCGTCTAGAGTATGAATCAGTTCGTGTTGCTCTATTACATCGCAACCCTCTGCCATCTCTAGATGTTGCAGTTCAGGAAATCTTATTCAATGAGAAAAGAAT
TGGCATTGTCTCCCCTATGTCTTCTGACGTCGCTCTTACAACCACTCATTCACGATCTACAAATGAGTCCAACTTCTGCAAAAACTGTAAACTTCATGGTCATAAGTTTG
CTAACTGTCCTACCATTGAGTGCAGGTATTGTCATAAGCAAGGGCATATCTTGGAAAGTTGTCCTACTCGTCCACCTTGTCCTTCTGGTCACTCACACAAACCAAAGTCC
TCTTCTAAATCTGGTTCTTCATCTGTTGTTGTTGCTGCCACCTCATCCGACATCACCACACCTCTAAGTTTTCAACTAGGTGATCTTCATGACTTACTGAAACAGGTGAT
ATCTTCCAACTGCCCTTGCTGTCACCCCAGGTATTTCTTGGCTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGACTTCGTCTAGAGTATGAATCAGTTCGTGTTGCTCTATTACATCGCAACCCTCTGCCATCTCTAGATGTTGCAGTTCAGGAAATCTTATTCAATGAGAAAAGAAT
TGGCATTGTCTCCCCTATGTCTTCTGACGTCGCTCTTACAACCACTCATTCACGATCTACAAATGAGTCCAACTTCTGCAAAAACTGTAAACTTCATGGTCATAAGTTTG
CTAACTGTCCTACCATTGAGTGCAGGTATTGTCATAAGCAAGGGCATATCTTGGAAAGTTGTCCTACTCGTCCACCTTGTCCTTCTGGTCACTCACACAAACCAAAGTCC
TCTTCTAAATCTGGTTCTTCATCTGTTGTTGTTGCTGCCACCTCATCCGACATCACCACACCTCTAAGTTTTCAACTAGGTGATCTTCATGACTTACTGAAACAGGTGAT
ATCTTCCAACTGCCCTTGCTGTCACCCCAGGTATTTCTTGGCTTCTTGA
Protein sequenceShow/hide protein sequence
MGLRLEYESVRVALLHRNPLPSLDVAVQEILFNEKRIGIVSPMSSDVALTTTHSRSTNESNFCKNCKLHGHKFANCPTIECRYCHKQGHILESCPTRPPCPSGHSHKPKS
SSKSGSSSVVVAATSSDITTPLSFQLGDLHDLLKQVISSNCPCCHPRYFLAS