CuGenDBv2

Gene ID	PI0008894
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr08:4696792..4698280
RNA-Seq Expression	PI0008894
Synteny	PI0008894
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

4.1e-60

76.05

Show/hide

Query:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG
        P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM +G SVREHVL+MMV FNVAEMNG
Subjt:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG

Query:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR
        AVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S R
Subjt:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

4.1e-60

76.05

Show/hide

Query:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG
        P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM +G SVREHVL+MMV FNVAEMNG
Subjt:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG

Query:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR
        AVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S R
Subjt:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

4.1e-60

76.05

Show/hide

Query:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG
        P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM +G SVREHVL+MMV FNVAEMNG
Subjt:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG

Query:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR
        AVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S R
Subjt:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

4.1e-60

76.05

Show/hide

Query:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG
        P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM +G SVREHVL+MMV FNVAEMNG
Subjt:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG

Query:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR
        AVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S R
Subjt:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

4.1e-60

76.05

Show/hide

Query:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG
        P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM +G SVREHVL+MMV FNVAEMNG
Subjt:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG

Query:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR
        AVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S R
Subjt:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

2.0e-60

76.05

Show/hide

Query:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG
        P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM +G SVREHVL+MMV FNVAEMNG
Subjt:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG

Query:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR
        AVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S R
Subjt:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR

A0A5A7TU93 Gag/pol protein

2.0e-60

76.05

Show/hide

Query:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG
        P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM +G SVREHVL+MMV FNVAEMNG
Subjt:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG

Query:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR
        AVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S R
Subjt:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR

A0A5A7TWB9 Gag/pol protein

2.0e-60

76.05

Show/hide

Query:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG
        P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM +G SVREHVL+MMV FNVAEMNG
Subjt:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG

Query:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR
        AVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S R
Subjt:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR

A0A5A7V4M1 Gag/pol protein

2.0e-60

76.05

Show/hide

Query:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG
        P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM +G SVREHVL+MMV FNVAEMNG
Subjt:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG

Query:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR
        AVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S R
Subjt:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR

A0A5D3CPJ6 Gag/pol protein

2.0e-60

76.05

Show/hide

Query:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG
        P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM +G SVREHVL+MMV FNVAEMNG
Subjt:  PCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNG

Query:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR
        AVIDE SQVSFILESLP+SFLQF SNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S R
Subjt:  AVIDEQSQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGACTACATCTTGGCCAGTATGTCTGA
CGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAAT
ACGTTTATAATGCCCGTATGAAGAAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAATGAACGGAGCGGTCATTGACGAGCAA
AGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCATAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTT
GCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAAAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGAGCCAAAGAGCCCCTAGAACTTATACATTCAGACCTCT
ACTCGAGATACCCTCCTCGCTTCCCGAGTCAATCGCGACTTGGGCAGTTCCAACATTCCAAAGAAACAGCAAAATTCTTAAGGGAGGGGAGAATTGTGAAGACTGCGTTC
TGTTTGAGTTTGGCGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSSFPCSKCIPDRQDAYDRWTKANEKARDYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKKGQSVREHVLDMMVQFNVAEMNGAVIDEQ
SQVSFILESLPKSFLQFHSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRAKEPLELIHSDLYSRYPPRFPSQSRLGQFQHSKETAKFLREGRIVKTAF
CLSLA

PI0008894 (gene) of Melon (PI 482460) v1 genome