CuGenDBv2

Gene ID	PI0008924
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr01:14581711..14582310
RNA-Seq Expression	PI0008924
Synteny	PI0008924
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

2.1e-60

67.46

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Query:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL
        RR+LW RLVEITS WS PGVVM DFNAIRVHSEA  GSP+ G+ME F+LAIR+ DLVEP VQGNWFTWTSKV GSG L RLD +LVN+  L+ WP++ V 
Subjt:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL

Query:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV
        VLPWGI  H PILFYP  +   +++SFRFFNHW ED SF +VV+ +W R  GVS LV LMRNLH LKP+
Subjt:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]

2.7e-63

69.23

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Query:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL
        RR LW  L EITS WS  GVVMGDFNAIRVHSEA GGSP+ G+ME+FDLAIR+ DLVEP VQGNWFTWTSKV GSG L RLD +LVN++ L+AWP++ + 
Subjt:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL

Query:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV
        VLPWGI  HSPILFYP  +   R++SFRFFNHW E+ SF +VV+ +W R  GVSLLVSLMRNLH LKP+
Subjt:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV

KAA0059841.1 reverse transcriptase [Cucumis melo var. makuwa]

9.2e-64

70.83

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Query:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL
        RR+LW RLVE TS WS PGVVMGDFNAIRVHSEA GGSP+ G+ME FDLAIR+ DLVEP VQGNWFTWTSKV GSG L RLD +LVN+  L+AWP++ V 
Subjt:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL

Query:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKP
        VLPWGI  HSPILFYP  +   +++SFRFFNHW ED SF +VV+ +W R  GVS LVSLMRNLH LKP
Subjt:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKP

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

2.1e-60

67.46

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Query:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL
        RR+LW RLVEITS WS PGVVM DFNAIRVHSEA  GSP+ G+ME F+LAIR+ DLVEP VQGNWFTWTSKV GSG L RLD +LVN+  L+ WP++ V 
Subjt:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL

Query:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV
        VLPWGI  H PILFYP  +   +++SFRFFNHW ED SF +VV+ +W R  GVS LV LMRNLH LKP+
Subjt:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV

XP_008466769.1 PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo]

9.2e-64

70.83

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Query:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL
        RR+LW RLVE TS WS PGVVMGDFNAIRVHSEA GGSP+ G+ME FDLAIR+ DLVEP VQGNWFTWTSKV GSG L RLD +LVN+  L+AWP++ V 
Subjt:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL

Query:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKP
        VLPWGI  HSPILFYP  +   +++SFRFFNHW ED SF +VV+ +W R  GVS LVSLMRNLH LKP
Subjt:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CRZ6 uncharacterized protein LOC103504100

4.5e-64

70.83

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Query:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL
        RR+LW RLVE TS WS PGVVMGDFNAIRVHSEA GGSP+ G+ME FDLAIR+ DLVEP VQGNWFTWTSKV GSG L RLD +LVN+  L+AWP++ V 
Subjt:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL

Query:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKP
        VLPWGI  HSPILFYP  +   +++SFRFFNHW ED SF +VV+ +W R  GVS LVSLMRNLH LKP
Subjt:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKP

A0A5A7SPE5 Reverse transcriptase domain-containing protein

1.0e-60

67.46

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Query:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL
        RR+LW RLVEITS WS PGVVM DFNAIRVHSEA  GSP+ G+ME F+LAIR+ DLVEP VQGNWFTWTSKV GSG L RLD +LVN+  L+ WP++ V 
Subjt:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL

Query:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV
        VLPWGI  H PILFYP  +   +++SFRFFNHW ED SF +VV+ +W R  GVS LV LMRNLH LKP+
Subjt:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV

A0A5A7TZS0 Reverse transcriptase domain-containing protein

1.3e-63

69.23

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Query:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL
        RR LW  L EITS WS  GVVMGDFNAIRVHSEA GGSP+ G+ME+FDLAIR+ DLVEP VQGNWFTWTSKV GSG L RLD +LVN++ L+AWP++ + 
Subjt:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL

Query:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV
        VLPWGI  HSPILFYP  +   R++SFRFFNHW E+ SF +VV+ +W R  GVSLLVSLMRNLH LKP+
Subjt:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV

A0A5A7V275 Reverse transcriptase

4.5e-64

70.83

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Query:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL
        RR+LW RLVE TS WS PGVVMGDFNAIRVHSEA GGSP+ G+ME FDLAIR+ DLVEP VQGNWFTWTSKV GSG L RLD +LVN+  L+AWP++ V 
Subjt:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL

Query:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKP
        VLPWGI  HSPILFYP  +   +++SFRFFNHW ED SF +VV+ +W R  GVS LVSLMRNLH LKP
Subjt:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKP

A0A5D3DXE4 Reverse transcriptase domain-containing protein

1.0e-60

67.46

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Query:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL
        RR+LW RLVEITS WS PGVVM DFNAIRVHSEA  GSP+ G+ME F+LAIR+ DLVEP VQGNWFTWTSKV GSG L RLD +LVN+  L+ WP++ V 
Subjt:  RRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVL

Query:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV
        VLPWGI  H PILFYP  +   +++SFRFFNHW ED SF +VV+ +W R  GVS LV LMRNLH LKP+
Subjt:  VLPWGIFYHSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G40390.1 DNAse I-like superfamily protein

7.6e-08

25.28

Show/hide

Query:  RRVLW---CRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVT---GDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAW
        RR LW    RL   +   + P +V+GDFN I   +E     P       +E     +R+ DLV+ P +G  +TW++    +  L +LD  +VN   L  +
Subjt:  RRVLW---CRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVT---GDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAW

Query:  PSLHVLVLPWGIFYHSPILFY----PGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGV-SLLVSLMRNLHDLK
        P+   +  P     H+  +      P + +++   SF++F+  +    F   + + W + + V S + SL   L + K
Subjt:  PSLHVLVLPWGIFYHSPILFY----PGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGV-SLLVSLMRNLHDLK

AT1G43760.1 DNAse I-like superfamily protein

3.8e-07

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Query:  VVMGDFNAIRVHSEACG----GSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVLVLPWGIFYHSPILFY
        +++GDF+ I   S+         P+ G +E+F   +R+ DLV+ P +G  +TW++    +  + +LD  + N    +++PS   +    G+  HSP +  
Subjt:  VVMGDFNAIRVHSEACG----GSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVLVLPWGIFYHSPILFY

Query:  PGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGV-SLLVSLMRNLHDLKPVRLLLS
             +R    FR+F+  +   +F   ++  W  ++ V S + SL  +L   K    LL+
Subjt:  PGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGV-SLLVSLMRNLHDLKPVRLLLS

Sequences

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CDS sequence

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ATGGGCCGTCGTGTGCTTTGGTGTCGGTTAGTTGAGATCACTTCTAGATGGTCGATTCCAGGTGTGGTTATGGGCGATTTTAATGCAATTCGAGTGCACTCTGAAGCTTG
TGGTGGGAGTCCAGTTACTGGTGATATGGAGAAGTTTGATCTTGCTATTCGTGAAGTTGACTTGGTTGAGCCGCCTGTTCAAGGAAACTGGTTCACTTGGACGAGTAAGG
TGTGTGGTTCAGGTTGGTTGTGTCGGCTTGATCTTATTTTGGTTAATGAGCAGGGGTTAACTGCTTGGCCTAGTTTGCATGTTTTGGTTCTGCCATGGGGGATTTTTTAT
CATTCCCCTATTTTATTCTATCCAGGTGTTGAGCAGCGTAGGCGTATTCTTTCGTTTCGTTTCTTTAACCATTGGGCGGAGGATACTTCATTCAGTGATGTGGTGTCTTC
GGTTTGGGTGAGAAGGTTGGGTGTGTCTCTGTTAGTGAGTCTTATGCGGAATTTGCATGACCTTAAGCCTGTGCGCCTTCTTTTATCAGTGGTAATCAGTCCGCCTTTAT
TGTTGGGAGAAGTATTGTTGATAACATTATGCTTTGTCAGGAGATTGTAG

mRNA sequence

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Protein sequence

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MGRRVLWCRLVEITSRWSIPGVVMGDFNAIRVHSEACGGSPVTGDMEKFDLAIREVDLVEPPVQGNWFTWTSKVCGSGWLCRLDLILVNEQGLTAWPSLHVLVLPWGIFY
HSPILFYPGVEQRRRILSFRFFNHWAEDTSFSDVVSSVWVRRLGVSLLVSLMRNLHDLKPVRLLLSVVISPPLLLGEVLLITLCFVRRL

PI0008924 (gene) of Melon (PI 482460) v1 genome