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PI0009061 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009061
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:26009292..26009684
RNA-Seq ExpressionPI0009061
SyntenyPI0009061
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-4169.23Show/hide
Query:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL
        +YSQGV MS +++ G RAG++S+ RN SSGSKRKRG +H E VEVI +A +F NDQL+ I DWPKEKRATEVELR EVVKQL DIP+LRS+DR KL++IL
Subjt:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL

Query:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV
        FRSV+  +GFLS+P KLKLEYC+ILLE NV
Subjt:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.4e-4370.87Show/hide
Query:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL
        MYSQGV MSP++M G RAG++S+ +NCSSGSKRK+G +H ETVEVI++A++F NDQL+AIA+WPKEKRATEVELRAEV+KQL DIPEL+SRDR KL++IL
Subjt:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL

Query:  FRSVDDTQGFLSVPPKLKLEYCSILLE
        FRSV+  +GFLS+P + KLEYC+ILL+
Subjt:  FRSVDDTQGFLSVPPKLKLEYCSILLE

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-4170.87Show/hide
Query:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL
        MYSQGV MS N+M G R G++S+ RNCSSGSKRKRG +H ETVEVIR+AM+F NDQL+ IA+WPKEKR TEVELRAEVVKQL +I EL SRDR KL++IL
Subjt:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL

Query:  FRSVDDTQGFLSVPPKLKLEYCSILLE
        F SV+  +GFLS+P +LKLEYC+ILL+
Subjt:  FRSVDDTQGFLSVPPKLKLEYCSILLE

KAE8646815.1 hypothetical protein Csa_005367, partial [Cucumis sativus]3.8e-4270.54Show/hide
Query:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL
        MYSQG+DM P++M+GTR  +SS+GRNCSSGSKRK GGQH E V+VI N M+  NDQL+AIA+W KEKRATEVEL  EVVKQL DI ELR+RDRVKL++I+
Subjt:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL

Query:  FRSVDDTQGFLSVPPKLKLEYCSILLEEN
        F  VDD +GFLS P KLKLEYC +LLE+N
Subjt:  FRSVDDTQGFLSVPPKLKLEYCSILLEEN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]8.4e-4268.46Show/hide
Query:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL
        MYSQGV MSP++M G RAG++S+ RNCSS SKRKRG +  ETVEVIR+ M+F N+QL+AIADWPKEKRA EVE+RA+VVKQL DIP+LRS+DR KL++IL
Subjt:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL

Query:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV
        FRS++  +GFLS+P +LKLEYC+ILL+  V
Subjt:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV

TrEMBL top hitse value%identityAlignment
A0A0A0KFW0 Uncharacterized protein6.3e-4370.77Show/hide
Query:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL
        MYSQG+DM P++M+GTR  +SS+GRNCSSGSKRK GGQH E V+VI N M+  NDQL+AIA+W KEKRATEVEL  EVVKQL DI ELR+RDRVKL++I+
Subjt:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL

Query:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV
        F  VDD +GFLS P KLKLEYC +LLE+NV
Subjt:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV

A0A1S3B4L3 uncharacterized protein LOC1034859534.1e-4268.46Show/hide
Query:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL
        MYSQGV MSP++M G RAG++S+ RNCSS SKRKRG +  ETVEVIR+ M+F N+QL+AIADWPKEKRA EVE+RA+VVKQL DIP+LRS+DR KL++IL
Subjt:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL

Query:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV
        FRS++  +GFLS+P +LKLEYC+ILL+  V
Subjt:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV

A0A5A7SQU2 Putative nuclease HARBI11.7e-4370.87Show/hide
Query:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL
        MYSQGV MSP++M G RAG++S+ +NCSSGSKRK+G +H ETVEVI++A++F NDQL+AIA+WPKEKRATEVELRAEV+KQL DIPEL+SRDR KL++IL
Subjt:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL

Query:  FRSVDDTQGFLSVPPKLKLEYCSILLE
        FRSV+  +GFLS+P + KLEYC+ILL+
Subjt:  FRSVDDTQGFLSVPPKLKLEYCSILLE

A0A5A7U0H7 Retrotransposon protein4.1e-4268.46Show/hide
Query:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL
        MYSQGV MSP++M G RAG++S+ RNCSS SKRKRG +  ETVEVIR+ M+F N+QL+AIADWPKEKRA EVE+RA+VVKQL DIP+LRS+DR KL++IL
Subjt:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL

Query:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV
        FRS++  +GFLS+P +LKLEYC+ILL+  V
Subjt:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV

A0A5D3BZU3 Retrotransposon protein1.2e-4169.23Show/hide
Query:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL
        +YSQGV MS +++ G RAG++S+ RN SSGSKRKRG +H E VEVI +A +F NDQL+ I DWPKEKRATEVELR EVVKQL DIP+LRS+DR KL++IL
Subjt:  MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRIL

Query:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV
        FRSV+  +GFLS+P KLKLEYC+ILLE NV
Subjt:  FRSVDDTQGFLSVPPKLKLEYCSILLEENV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGCCAAGGGGTGGATATGTCCCCAAATGACATGGTAGGAACACGTGCAGGTCGGTCAAGTGATGGACGGAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGG
CCAACATAGTGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTGCAAATGATCAATTGAGGGCAATTGCGGATTGGCCAAAGGAGAAGCGTGCAACGGAGGTCGAAT
TGCGTGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGTCGAGATAGGGTAAAGCTTCTGCGAATATTATTCCGTAGTGTTGATGACACACAGGGATTC
CTGTCGGTCCCACCGAAACTGAAATTGGAGTATTGTAGTATTTTGTTGGAAGAAAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATAGCCAAGGGGTGGATATGTCCCCAAATGACATGGTAGGAACACGTGCAGGTCGGTCAAGTGATGGACGGAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGG
CCAACATAGTGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTGCAAATGATCAATTGAGGGCAATTGCGGATTGGCCAAAGGAGAAGCGTGCAACGGAGGTCGAAT
TGCGTGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGTCGAGATAGGGTAAAGCTTCTGCGAATATTATTCCGTAGTGTTGATGACACACAGGGATTC
CTGTCGGTCCCACCGAAACTGAAATTGGAGTATTGTAGTATTTTGTTGGAAGAAAATGTTTGA
Protein sequenceShow/hide protein sequence
MYSQGVDMSPNDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETVEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGF
LSVPPKLKLEYCSILLEENV