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PI0009094 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009094
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:17462646..17462978
RNA-Seq ExpressionPI0009094
SyntenyPI0009094
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047014.1 hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa]2.2e-2260.82Show/hide
Query:  RQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF
        R+GRQV   V  TR ANRA  S ++SSNPH +  QN+EES+F+ FAQR+  H MP   TVDK+F IERLK LGAMTF G T+ ADA K L+L+EKCF
Subjt:  RQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF

KAA0053236.1 uncharacterized protein E6C27_scaffold102G00210 [Cucumis melo var. makuwa]1.8e-2153.85Show/hide
Query:  MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLI
        M P+ R R+G QV TGV+ TR+ +R  +SD+MS N H    QN+ ES+F+ F +++  H MPT  T+ K+F I+RLK L AMTF GTT+P DA+KWL+LI
Subjt:  MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLI

Query:  EKCF
        EKCF
Subjt:  EKCF

KAA0054080.1 hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa]3.4e-2056.99Show/hide
Query:  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF
        QV   V++  SANRA   D+MSSNPH+T  QN+EES+FN FAQRVA HL+P    V+K+  IER+K LGA  F GT  P + +KWL+L EKCF
Subjt:  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF

TYJ97632.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-2254.81Show/hide
Query:  MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLI
        M P+ R R+G QV TGV+ TR+ +R  +SD+MS N H    QN+ ES+F+ F +++  H MPT  T+ K+F IERLK L AMTF GTT+P DA+KWL+LI
Subjt:  MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLI

Query:  EKCF
        EKCF
Subjt:  EKCF

TYK27664.1 uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa]2.0e-2056.99Show/hide
Query:  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF
        QV   V++  SANRA   D+MSSNPH+T  QN+EES+FN FA+RVA HL+P    V+K+  IER+K LGA TF GT  P + +KWL+L EKCF
Subjt:  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF

TrEMBL top hitse value%identityAlignment
A0A5A7TVM1 Uncharacterized protein1.0e-2260.82Show/hide
Query:  RQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF
        R+GRQV   V  TR ANRA  S ++SSNPH +  QN+EES+F+ FAQR+  H MP   TVDK+F IERLK LGAMTF G T+ ADA K L+L+EKCF
Subjt:  RQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF

A0A5A7UFQ1 Uncharacterized protein1.7e-2056.99Show/hide
Query:  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF
        QV   V++  SANRA   D+MSSNPH+T  QN+EES+FN FAQRVA HL+P    V+K+  IER+K LGA  F GT  P + +KWL+L EKCF
Subjt:  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF

A0A5A7UG91 Uncharacterized protein8.9e-2253.85Show/hide
Query:  MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLI
        M P+ R R+G QV TGV+ TR+ +R  +SD+MS N H    QN+ ES+F+ F +++  H MPT  T+ K+F I+RLK L AMTF GTT+P DA+KWL+LI
Subjt:  MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLI

Query:  EKCF
        EKCF
Subjt:  EKCF

A0A5D3BCS9 Gag/pol protein3.0e-2254.81Show/hide
Query:  MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLI
        M P+ R R+G QV TGV+ TR+ +R  +SD+MS N H    QN+ ES+F+ F +++  H MPT  T+ K+F IERLK L AMTF GTT+P DA+KWL+LI
Subjt:  MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLI

Query:  EKCF
        EKCF
Subjt:  EKCF

A0A5D3DVY7 Uncharacterized protein9.8e-2156.99Show/hide
Query:  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF
        QV   V++  SANRA   D+MSSNPH+T  QN+EES+FN FA+RVA HL+P    V+K+  IER+K LGA TF GT  P + +KWL+L EKCF
Subjt:  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACCACGAGGAAGGCCAAGGCAAGGTAGGCAAGTGACAACTGGTGTTCGAGCTACTAGGAGCGCTAATAGAGCGCCAAAATCGGATCAAATGTCTAGTAATCCTCA
TACCACAACTGAACAAAACATGGAAGAAAGTATATTCAATCACTTTGCTCAGAGAGTAGCATATCACCTTATGCCTACAAACCCTACAGTAGATAAGAAGTTCAACATCG
AAAGGTTGAAGGTGTTGGGAGCAATGACCTTCATAGGGACCACTGATCCAGCCGACGCGGAGAAGTGGTTGACCTTGATTGAGAAGTGTTTTTGGGATGATGGAGTGCCT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAAACCACGAGGAAGGCCAAGGCAAGGTAGGCAAGTGACAACTGGTGTTCGAGCTACTAGGAGCGCTAATAGAGCGCCAAAATCGGATCAAATGTCTAGTAATCCTCA
TACCACAACTGAACAAAACATGGAAGAAAGTATATTCAATCACTTTGCTCAGAGAGTAGCATATCACCTTATGCCTACAAACCCTACAGTAGATAAGAAGTTCAACATCG
AAAGGTTGAAGGTGTTGGGAGCAATGACCTTCATAGGGACCACTGATCCAGCCGACGCGGAGAAGTGGTTGACCTTGATTGAGAAGTGTTTTTGGGATGATGGAGTGCCT
TGA
Protein sequenceShow/hide protein sequence
MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCFWDDGVP