; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0009104 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009104
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:9507561..9508168
RNA-Seq ExpressionPI0009104
SyntenyPI0009104
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025369.1 uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa]1.1e-4775.89Show/hide
Query:  DDLNREVRRIRRERREEN--NQTIPQEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFKGSSGE
        +DLNREVRRIRRERREEN  +    QEPL   EP L+   + NL R  +G+VREKTLREL+EPDEDQRPLCIVIP TTQPFELK GLIHL LIFKGS GE
Subjt:  DDLNREVRRIRRERREEN--NQTIPQEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFKGSSGE

Query:  DPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
        D HKHLKDFHMVC SMRPH +SEEQLNLRAFPF LTD AKR
Subjt:  DPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-4875.34Show/hide
Query:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK
        P  +DLN+EVRRIRRERREENN  IP    QEPL   EP L+   + NL R  MG+VREKT+R+L E DEDQRPLCIVI  TTQPFELKP LIHL  IFK
Subjt:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK

Query:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
        G+SGEDPHKHLKDFHMVCDSMRPHG+SEEQLNLRAFPFSLTD AKR
Subjt:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
KAA0058334.1 uncharacterized protein E6C27_scaffold409G00180 [Cucumis melo var. makuwa]8.1e-4671.92Show/hide
Query:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK
        P  +DLNREVR I+RERREEN  +IP    QEPL   EP L+   + NL R  M +VREKTLREL+EP+EDQRPLC+VIPPTTQPFELK  LIHL  IFK
Subjt:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK

Query:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
        G+ GEDPHKHLK FHMVCDSMRPH +S+EQLNLRAFPFSLTD AKR
Subjt:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-4477.52Show/hide
Query:  REENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFKGSSGEDPHKHLKDFHMV
        REEN  +IP    QEPL   EPIL+   + NL R  MG+VREKTLREL+EPDEDQRPLCIVIPPTTQPFELKPGLIHL  IFKGSS EDP+KHLKDFHMV
Subjt:  REENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFKGSSGEDPHKHLKDFHMV

Query:  CDSMRPHGVSEEQLNLRAFPFSLTDTAKR
        CDSMRPH +S+EQLNLRAFPFSLTD AKR
Subjt:  CDSMRPHGVSEEQLNLRAFPFSLTDTAKR
KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.0e-4575Show/hide
Query:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK
        P  +DLNREVRRIRRERREEN  +IP    QEPL   EP L+   + NL R  M +VREKTLREL+E DE+QRPLCIVIPPTTQPFELKPGLIHL  IFK
Subjt:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK

Query:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSL
        GS GEDPHKHLKDFHMV DSMRPHG+SEEQLNLRAF F L
Subjt:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSL
TrEMBL top hitse value%identityAlignment
A0A5A7SRF5 Retrotransposon gag protein8.5e-4975.34Show/hide
Query:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK
        P  +DLN+EVRRIRRERREENN  IP    QEPL   EP L+   + NL R  MG+VREKT+R+L E DEDQRPLCIVI  TTQPFELKP LIHL  IFK
Subjt:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK

Query:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
        G+SGEDPHKHLKDFHMVCDSMRPHG+SEEQLNLRAFPFSLTD AKR
Subjt:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
A0A5A7UT28 Retrotrans_gag domain-containing protein3.9e-4671.92Show/hide
Query:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK
        P  +DLNREVR I+RERREEN  +IP    QEPL   EP L+   + NL R  M +VREKTLREL+EP+EDQRPLC+VIPPTTQPFELK  LIHL  IFK
Subjt:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK

Query:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
        G+ GEDPHKHLK FHMVCDSMRPH +S+EQLNLRAFPFSLTD AKR
Subjt:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
A0A5A7V594 Retrotransposon gag protein1.3e-4477.52Show/hide
Query:  REENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFKGSSGEDPHKHLKDFHMV
        REEN  +IP    QEPL   EPIL+   + NL R  MG+VREKTLREL+EPDEDQRPLCIVIPPTTQPFELKPGLIHL  IFKGSS EDP+KHLKDFHMV
Subjt:  REENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFKGSSGEDPHKHLKDFHMV

Query:  CDSMRPHGVSEEQLNLRAFPFSLTDTAKR
        CDSMRPH +S+EQLNLRAFPFSLTD AKR
Subjt:  CDSMRPHGVSEEQLNLRAFPFSLTDTAKR
A0A5A7VQ60 Retrotransposon gag protein4.3e-4575Show/hide
Query:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK
        P  +DLNREVRRIRRERREEN  +IP    QEPL   EP L+   + NL R  M +VREKTLREL+E DE+QRPLCIVIPPTTQPFELKPGLIHL  IFK
Subjt:  PGSDDLNREVRRIRRERREENNQTIP----QEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFK

Query:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSL
        GS GEDPHKHLKDFHMV DSMRPHG+SEEQLNLRAF F L
Subjt:  GSSGEDPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSL
A0A5D3DIP6 Retrotrans_gag domain-containing protein5.5e-4875.89Show/hide
Query:  DDLNREVRRIRRERREEN--NQTIPQEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFKGSSGE
        +DLNREVRRIRRERREEN  +    QEPL   EP L+   + NL R  +G+VREKTLREL+EPDEDQRPLCIVIP TTQPFELK GLIHL LIFKGS GE
Subjt:  DDLNREVRRIRRERREEN--NQTIPQEPLENQEPILE---NQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFKGSSGE

Query:  DPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
        D HKHLKDFHMVC SMRPH +SEEQLNLRAFPF LTD AKR
Subjt:  DPHKHLKDFHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTTTGCCGGGGAGCGACGATCTCAATAGGGAAGTGCGTAGAATTAGGAGAGAAAGGAGAGAAGAAAATAACCAAACCATTCCTCAAGAGCCTTTAGAAAACCA
AGAGCCTATTTTAGAAAACCAAAACCTTGATAGACAAGCCATGGGCCAAGTTAGAGAAAAAACCTTAAGAGAACTCTCTGAACCTGATGAGGACCAAAGGCCACTCTGTA
TAGTTATTCCCCCAACAACTCAACCCTTTGAGCTAAAACCTGGACTAATCCACCTCTCACTTATATTCAAGGGTAGTTCAGGCGAAGACCCTCATAAACACCTCAAAGAC
TTTCATATGGTTTGTGACTCAATGAGACCCCACGGAGTTTCAGAGGAACAACTCAACCTGAGAGCCTTTCCATTTTCCTTAACCGACACAGCCAAAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCTTTGCCGGGGAGCGACGATCTCAATAGGGAAGTGCGTAGAATTAGGAGAGAAAGGAGAGAAGAAAATAACCAAACCATTCCTCAAGAGCCTTTAGAAAACCA
AGAGCCTATTTTAGAAAACCAAAACCTTGATAGACAAGCCATGGGCCAAGTTAGAGAAAAAACCTTAAGAGAACTCTCTGAACCTGATGAGGACCAAAGGCCACTCTGTA
TAGTTATTCCCCCAACAACTCAACCCTTTGAGCTAAAACCTGGACTAATCCACCTCTCACTTATATTCAAGGGTAGTTCAGGCGAAGACCCTCATAAACACCTCAAAGAC
TTTCATATGGTTTGTGACTCAATGAGACCCCACGGAGTTTCAGAGGAACAACTCAACCTGAGAGCCTTTCCATTTTCCTTAACCGACACAGCCAAAAGATGA
Protein sequenceShow/hide protein sequence
MAPLPGSDDLNREVRRIRRERREENNQTIPQEPLENQEPILENQNLDRQAMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLSLIFKGSSGEDPHKHLKD
FHMVCDSMRPHGVSEEQLNLRAFPFSLTDTAKR