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PI0009120 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009120
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRas-related protein Rab-1B
Genome locationchr09:16466720..16472854
RNA-Seq ExpressionPI0009120
SyntenyPI0009120
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0012505 - endomembrane system (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001806 - Small GTPase
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8536599.1 hypothetical protein F0562_029077 [Nyssa sinensis]1.1e-3070.09Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+LDGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYANDTVCKLL+GN  DLVENK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VVDT ++
Subjt:  VVDTHSS

KAB1208565.1 Ras-related protein RABD1 [Morella rubra]3.3e-3069.16Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+LDGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYAND+VCKLL+GN  DLVENK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VVDT ++
Subjt:  VVDTHSS

KAF8404299.1 hypothetical protein HHK36_009182 [Tetracentron sinense]1.9e-3065.25Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+LDGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYAND+VCKLL+GN  DLVENK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSSVRLPLTTIRRL
        VVDT ++ ++  T + RL
Subjt:  VVDTHSSVRLPLTTIRRL

XP_016715138.2 ras-related protein RABD1 [Gossypium hirsutum]3.3e-3069.16Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+LDGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYAND+VCKLL+GN  DLVENK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VVDT ++
Subjt:  VVDTHSS

XP_028112597.1 ras-related protein RABD1 [Camellia sinensis]1.1e-3070.09Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+LDGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYANDTVCKLL+GN  DLVENK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VVDT ++
Subjt:  VVDTHSS

TrEMBL top hitse value%identityAlignment
A0A5B6ZHM4 Uncharacterized protein5.4e-3170.09Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+LDGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYANDTVCKLL+GN  DLVENK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VVDT ++
Subjt:  VVDTHSS

A0A5B6ZIH7 Putative ras-related protein RABD1-like isoform X15.4e-3170.09Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+LDGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYANDTVCKLL+GN  DLVENK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VVDT ++
Subjt:  VVDTHSS

A0A5B6ZJV3 Uncharacterized protein5.4e-3170.09Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+LDGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYANDTVCKLL+GN  DLVENK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VVDT ++
Subjt:  VVDTHSS

A0A5B6ZKS3 Putative ras-related protein RABD15.4e-3170.09Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+LDGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYANDTVCKLL+GN  DLVENK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VVDT ++
Subjt:  VVDTHSS

A0A5J5B1M4 Uncharacterized protein5.4e-3170.09Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+LDGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYANDTVCKLL+GN  DLVENK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VVDT ++
Subjt:  VVDTHSS

SwissProt top hitse value%identityAlignment
P16976 GTP-binding protein YPTM13.8e-2964.42Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSYVDSYISTIGVDFKIRTV+++GKT+KLQIWDT GQERF+TITSSYY GAHGII                    I+RYAND+V KLL+GN  DL EN+
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDT
         VDT
Subjt:  VVDT

P28188 Ras-related protein RABD2a1.6e-2763.11Show/hide
Query:  TNDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVEN
        ++DSYV+SYISTIGVDFKIRTV+ DGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYA+D V KLL+GN SDL EN
Subjt:  TNDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVEN

Query:  KVV
        + +
Subjt:  KVV

Q05737 GTP-binding protein YPTM21.9e-2863.55Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSY+DSYISTIGVDFKIRTV+ DGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYA+D V KLL+GN SDL  NK
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VV T ++
Subjt:  VVDTHSS

Q9FPJ4 Ras-related protein RABD2b2.7e-2760.75Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSY+DSYISTIGVDFKIRTV+ DGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYA++ V KLL+GN +DL   K
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VV T ++
Subjt:  VVDTHSS

Q9ZRE2 Ras-related protein RABD14.4e-3063.21Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +D+Y+DSYISTIGVDFKIRT++ DGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYAN++VCKLLIGN +D+VE+K
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHS
        VV T +
Subjt:  VVDTHS

Arabidopsis top hitse value%identityAlignment
AT1G02130.1 RAS 51.1e-2863.11Show/hide
Query:  TNDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVEN
        ++DSYV+SYISTIGVDFKIRTV+ DGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYA+D V KLL+GN SDL EN
Subjt:  TNDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVEN

Query:  KVV
        + +
Subjt:  KVV

AT3G11730.1 Ras-related small GTP-binding family protein3.2e-3163.21Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +D+Y+DSYISTIGVDFKIRT++ DGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYAN++VCKLLIGN +D+VE+K
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHS
        VV T +
Subjt:  VVDTHS

AT4G17530.1 RAB GTPase homolog 1C3.3e-2860.75Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSY+DSYISTIGVDFKIRTV+ DGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYA++ V KLL+GN  DL   K
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VV T ++
Subjt:  VVDTHSS

AT5G03520.1 RAB GTPase homolog 8C3.0e-2149.5Show/hide
Query:  TNDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVEN
        ++D++  S+I+TIG+DFKIRTV+LDGK IKLQIWDT GQERF+TIT++YY GA GI+                    I ++A+D V K+L+GN +D+ E+
Subjt:  TNDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVEN

Query:  K
        K
Subjt:  K

AT5G47200.1 RAB GTPase homolog 1A1.9e-2860.75Show/hide
Query:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK
        +DSY+DSYISTIGVDFKIRTV+ DGKTIKLQIWDT GQERF+TITSSYY GAHGII                    I+RYA++ V KLL+GN +DL   K
Subjt:  NDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTITSSYYIGAHGII--------------------INRYANDTVCKLLIGNTSDLVENK

Query:  VVDTHSS
        VV T ++
Subjt:  VVDTHSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGACTTGGGCTTGAATTATGGGCTTGGCGGTTAAAGCAGAATGCGAAGCGTTTTGCGAGACGCGTTGAGTGTCTGAAGCTTGGCGGCATGCCTTGCGATATGGG
GCAAAACGCATTTTGCTATGCCTCATATTCAAGAAATACTACTAGCCTCACTCTCTTGGGTTCGACACCCGTACCTCCGCCTACTACGAATGATTCTTATGTGGATAGCT
ATATAAGTACAATTGGAGTTGATTTCAAAATCAGAACTGTGAAATTGGATGGAAAGACCATTAAGCTCCAGATTTGGGACACTGTAGGTCAGGAGAGATTCAAGACTATA
ACAAGTAGCTATTACATAGGTGCACATGGAATAATTATTAATAGATATGCTAATGATACTGTATGCAAGCTTTTAATAGGAAATACATCTGATTTAGTTGAGAACAAGGT
TGTTGACACGCATAGTTCTGTTAGACTCCCCCTAACTACTATACGTCGTCTTCTCACAGAGGTAGTCAACTTGTCGGAAGCACAATGTTTCTCAAAACTAGATCACAGAA
GAAATTTCTTGCACAGATTCAAAACATCACAAGGATCATGCAAACCGCCACAACCCAGGCCATCGCCCGCTCCGTCCACACGACCAGCACACCACCAGTCGTCGTCCAGT
CGTGCCGCCAGTACGCGCAAGGAGCTCCATCTCGCGCCGCCAGCCCGCGGATCTGCCGCCCTTCATCTTGCCGCTGCCCAGCCCGCCACCCTTCGCACCGCCGTCATCCT
TCCAGCCACAATCTTGACATTTTTGGTGAGTTTCGTGCCGGTTTCTCTTTGGCTCGTTGGTGCTCTTGGTTTGACTCGTTTAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGGACTTGGGCTTGAATTATGGGCTTGGCGGTTAAAGCAGAATGCGAAGCGTTTTGCGAGACGCGTTGAGTGTCTGAAGCTTGGCGGCATGCCTTGCGATATGGG
GCAAAACGCATTTTGCTATGCCTCATATTCAAGAAATACTACTAGCCTCACTCTCTTGGGTTCGACACCCGTACCTCCGCCTACTACGAATGATTCTTATGTGGATAGCT
ATATAAGTACAATTGGAGTTGATTTCAAAATCAGAACTGTGAAATTGGATGGAAAGACCATTAAGCTCCAGATTTGGGACACTGTAGGTCAGGAGAGATTCAAGACTATA
ACAAGTAGCTATTACATAGGTGCACATGGAATAATTATTAATAGATATGCTAATGATACTGTATGCAAGCTTTTAATAGGAAATACATCTGATTTAGTTGAGAACAAGGT
TGTTGACACGCATAGTTCTGTTAGACTCCCCCTAACTACTATACGTCGTCTTCTCACAGAGGTAGTCAACTTGTCGGAAGCACAATGTTTCTCAAAACTAGATCACAGAA
GAAATTTCTTGCACAGATTCAAAACATCACAAGGATCATGCAAACCGCCACAACCCAGGCCATCGCCCGCTCCGTCCACACGACCAGCACACCACCAGTCGTCGTCCAGT
CGTGCCGCCAGTACGCGCAAGGAGCTCCATCTCGCGCCGCCAGCCCGCGGATCTGCCGCCCTTCATCTTGCCGCTGCCCAGCCCGCCACCCTTCGCACCGCCGTCATCCT
TCCAGCCACAATCTTGACATTTTTGGTGAGTTTCGTGCCGGTTTCTCTTTGGCTCGTTGGTGCTCTTGGTTTGACTCGTTTAAGGTAA
Protein sequenceShow/hide protein sequence
MGGLGLELWAWRLKQNAKRFARRVECLKLGGMPCDMGQNAFCYASYSRNTTSLTLLGSTPVPPPTTNDSYVDSYISTIGVDFKIRTVKLDGKTIKLQIWDTVGQERFKTI
TSSYYIGAHGIIINRYANDTVCKLLIGNTSDLVENKVVDTHSSVRLPLTTIRRLLTEVVNLSEAQCFSKLDHRRNFLHRFKTSQGSCKPPQPRPSPAPSTRPAHHQSSSS
RAASTRKELHLAPPARGSAALHLAAAQPATLRTAVILPATILTFLVSFVPVSLWLVGALGLTRLR