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PI0009145 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009145
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr11:25440430..25441746
RNA-Seq ExpressionPI0009145
SyntenyPI0009145
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]7.1e-5975.45Show/hide
Query:  MSSVRG--RGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR NSTSSKG RPSSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR
        PTTYSQAV  +K+F+PRPEIK+YFQK +V+YDPIIEPEYQSLT++E VSKIFP+ FNFLPEDL+K +
Subjt:  PTTYSQAVAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR

KAA0038028.1 polyprotein [Cucumis melo var. makuwa]7.1e-6745.1Show/hide
Query:  MSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASPLSNLESST---PPTTYSQAVAPEKQFIPRPEIKTYFQKQV
        MSA+ YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T  +  ASP ++   S     P++YSQ V P K F PRP I  YF K  
Subjt:  MSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASPLSNLESST---PPTTYSQAVAPEKQFIPRPEIKTYFQKQV

Query:  VIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSKPFVPQS
        ++ D  IEPE+   ++ E  S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF+ + P++W QG+F  + FS PF P S
Subjt:  VIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSKPFVPQS

Query:  YSYQDYIKAFFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTTV------N
        Y+Y+DY KA++       +K L K+L+IKWW+K+N+ H  +  +K+WF  N +LQD+ ++++  FL  K+ +++ L  A+T  +F  +++  V      N
Subjt:  YSYQDYIKAFFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTTV------N

Query:  ASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP
           S   + +SI   D+L    Y   D+NDPFLD+QP
Subjt:  ASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.6e-6679.21Show/hide
Query:  MSSVRG--RGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR NSTSSKG+RP SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK
        PTTYSQAV P+K+F+PRPEIK+YFQK +V+YDPIIE EYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Subjt:  PTTYSQAVAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK

KAA0050447.1 polyprotein [Cucumis melo var. makuwa]3.5e-5841.85Show/hide
Query:  STSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASPLSNLESST---PPTTYSQAVA
        +T S+G    S+Q+ A SPMSA+ YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+ PSG  T  +  ASP ++   S     P++YSQ V 
Subjt:  STSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASPLSNLESST---PPTTYSQAVA

Query:  PEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTH
          K F PRP I  YF K  ++ D  IEPE+    + E  ++IFP  FNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSK +IF+ + P++
Subjt:  PEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTH

Query:  WNQGIFTEKSFSKPFVPQSYSYQDYIKAFFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATT
        W QG+F  + FS PF P SY+Y+              +K L K+L IKWW+K+N+ H  +  +K+WF  N +LQ++ ++++  FL  K+ +++ LA A+T
Subjt:  WNQGIFTEKSFSKPFVPQSYSYQDYIKAFFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATT

Query:  DADFQRLLSTTV------NASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP
          +F  +++  V      N      ++ +S+ + D+L    Y   D+NDPFLD+QP
Subjt:  DADFQRLLSTTV------NASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP

TYK28082.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.3e-5737.19Show/hide
Query:  SSKGSRPS----SSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASP-LSNLESSTP--PTTYSQA
        SS G+ PS     SQ+ APSPMSA+ YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T  +  ASP  S+  S+ P  P++YSQ 
Subjt:  SSKGSRPS----SSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASP-LSNLESSTP--PTTYSQA

Query:  VAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINP
        V P K F PRP I  YF K  ++ D  IEPE+   ++ E  S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF+ + P
Subjt:  VAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINP

Query:  THWNQGIFTEKSFSKPFVPQSYSYQDYIKA------------------------------------------------------FFNTASYP--------
        ++W QG+F  + FS  F   SY+Y+DY KA                                                      FF  + Y         
Subjt:  THWNQGIFTEKSFSKPFVPQSYSYQDYIKA------------------------------------------------------FFNTASYP--------

Query:  ---------------------QYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTTV---
                              +K L K+L+IKWW+K+N+ H  +  +K+WF  N +LQD+ ++++  F   K+ +++ LA A+T  +F  +++  V   
Subjt:  ---------------------QYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTTV---

Query:  ---NASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP
           N      ++  SI + D+L    Y   D+NDPFL +QP
Subjt:  ---NASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7T5B0 Polyprotein3.4e-6745.1Show/hide
Query:  MSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASPLSNLESST---PPTTYSQAVAPEKQFIPRPEIKTYFQKQV
        MSA+ YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T  +  ASP ++   S     P++YSQ V P K F PRP I  YF K  
Subjt:  MSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASPLSNLESST---PPTTYSQAVAPEKQFIPRPEIKTYFQKQV

Query:  VIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSKPFVPQS
        ++ D  IEPE+   ++ E  S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF+ + P++W QG+F  + FS PF P S
Subjt:  VIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSKPFVPQS

Query:  YSYQDYIKAFFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTTV------N
        Y+Y+DY KA++       +K L K+L+IKWW+K+N+ H  +  +K+WF  N +LQD+ ++++  FL  K+ +++ L  A+T  +F  +++  V      N
Subjt:  YSYQDYIKAFFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTTV------N

Query:  ASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP
           S   + +SI   D+L    Y   D+NDPFLD+QP
Subjt:  ASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP

A0A5A7TM80 Putative Retrotransposon protein7.7e-6779.21Show/hide
Query:  MSSVRG--RGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR NSTSSKG+RP SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK
        PTTYSQAV P+K+F+PRPEIK+YFQK +V+YDPIIE EYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Subjt:  PTTYSQAVAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK

A0A5A7U7T9 Polyprotein1.7e-5841.85Show/hide
Query:  STSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASPLSNLESST---PPTTYSQAVA
        +T S+G    S+Q+ A SPMSA+ YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+ PSG  T  +  ASP ++   S     P++YSQ V 
Subjt:  STSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASPLSNLESST---PPTTYSQAVA

Query:  PEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTH
          K F PRP I  YF K  ++ D  IEPE+    + E  ++IFP  FNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSK +IF+ + P++
Subjt:  PEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTH

Query:  WNQGIFTEKSFSKPFVPQSYSYQDYIKAFFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATT
        W QG+F  + FS PF P SY+Y+              +K L K+L IKWW+K+N+ H  +  +K+WF  N +LQ++ ++++  FL  K+ +++ LA A+T
Subjt:  WNQGIFTEKSFSKPFVPQSYSYQDYIKAFFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATT

Query:  DADFQRLLSTTV------NASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP
          +F  +++  V      N      ++ +S+ + D+L    Y   D+NDPFLD+QP
Subjt:  DADFQRLLSTTV------NASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP

A0A5D3E4J4 Uncharacterized protein6.5e-5875.76Show/hide
Query:  MSSVRG--RGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR NSTSSKG+R SSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTP
Subjt:  MSSVRG--RGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRK
        PTTYSQAV P+K+F+PRP+IK YFQK +V+YDP IE EYQSLT++E VSKIFPE FNFLPEDLRK
Subjt:  PTTYSQAVAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRK

E5GCE6 Uncharacterized protein3.5e-5975.45Show/hide
Query:  MSSVRG--RGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR NSTSSKG RPSSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR
        PTTYSQAV  +K+F+PRPEIK+YFQK +V+YDPIIEPEYQSLT++E VSKIFP+ FNFLPEDL+K +
Subjt:  PTTYSQAVAPEKQFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAACTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAA
CAGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTC
AAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGC
CCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAA
CCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTTTTTCAACACAGCTTCATATCCACAATACAAGATGTTAGTCAAAAATCTCAAAATTAAATGGTG
GGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCTGAACG
ATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGACAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCC
TCCATACAGGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAACTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAA
CAGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTC
AAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGC
CCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAA
CCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTTTTTCAACACAGCTTCATATCCACAATACAAGATGTTAGTCAAAAATCTCAAAATTAAATGGTG
GGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCTGAACG
ATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGACAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCC
TCCATACAGGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATGTGA
Protein sequenceShow/hide protein sequence
MSSVRGRGRVNSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEK
QFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSK
PFVPQSYSYQDYIKAFFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTTVNASTSSKSASS
SIQEDDELASPEYDLNDPFLDSQPM