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PI0009180 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009180
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr02:15403665..15404499
RNA-Seq ExpressionPI0009180
SyntenyPI0009180
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]9.7e-2258.72Show/hide
Query:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV
        L+ HKLYGFIDG+N  PP++             SS TST+   SNP +EDW+AKDQALM++INATLS EALAYVVG +SSKQV  VL K YSS ++SN+V
Subjt:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV

Query:  SLKTDLQSV
        +LK+DLQ++
Subjt:  SLKTDLQSV

TYK17989.1 uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]2.7e-2462.16Show/hide
Query:  PPLRTHKLYGFIDGSNVAPPKSIFAP--PSTSSTPQTSSPTSTLTSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSN
        P L+ HKLYGFID S   PPK+I  P   S+S+T QT+S ++T  SNP +EDW AKDQA M LINATLSVEAL YVVG  SS QV K LE++YSS+T++N
Subjt:  PPLRTHKLYGFIDGSNVAPPKSIFAP--PSTSSTPQTSSPTSTLTSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSN

Query:  IVSLKTDLQSV
        IV+LK+DLQ +
Subjt:  IVSLKTDLQSV

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]9.7e-2258.72Show/hide
Query:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV
        L+ HKLYGFIDG+N  PP++             SS TST+   SNP +EDW+AKDQALM++INATLS EALAYVVG +SSKQV  VL K YSS ++SN+V
Subjt:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV

Query:  SLKTDLQSV
        +LK+DLQ++
Subjt:  SLKTDLQSV

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]9.7e-2258.72Show/hide
Query:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV
        L+ HKLYGFIDG+N  PP++             SS TST+   SNP +EDW+AKDQALM++INATLS EALAYVVG +SSKQV  VL K YSS ++SN+V
Subjt:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV

Query:  SLKTDLQSV
        +LK+DLQ++
Subjt:  SLKTDLQSV

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]1.1e-2258.72Show/hide
Query:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTLTSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIVSL
        L+ HKL+GFIDGS  AP + + +   T S P T+  TS    NP FEDW+AKDQALM+LINATLS EALAYVV   +SKQV +VLEK+YSS++++N+V+L
Subjt:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTLTSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIVSL

Query:  KTDLQSVIE
        K+DLQS+++
Subjt:  KTDLQSVIE

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X24.7e-2258.72Show/hide
Query:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV
        L+ HKLYGFIDG+N  PP++             SS TST+   SNP +EDW+AKDQALM++INATLS EALAYVVG +SSKQV  VL K YSS ++SN+V
Subjt:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV

Query:  SLKTDLQSV
        +LK+DLQ++
Subjt:  SLKTDLQSV

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X14.7e-2258.72Show/hide
Query:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV
        L+ HKLYGFIDG+N  PP++             SS TST+   SNP +EDW+AKDQALM++INATLS EALAYVVG +SSKQV  VL K YSS ++SN+V
Subjt:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV

Query:  SLKTDLQSV
        +LK+DLQ++
Subjt:  SLKTDLQSV

A0A5D3CLI6 T4.54.7e-2258.72Show/hide
Query:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV
        L+ HKLYGFIDG+N  PP++             SS TST+   SNP +EDW+AKDQALM++INATLS EALAYVVG +SSKQV  VL K YSS ++SN+V
Subjt:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTL--TSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIV

Query:  SLKTDLQSV
        +LK+DLQ++
Subjt:  SLKTDLQSV

A0A5D3D3T6 Retrotran_gag_3 domain-containing protein1.3e-2462.16Show/hide
Query:  PPLRTHKLYGFIDGSNVAPPKSIFAP--PSTSSTPQTSSPTSTLTSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSN
        P L+ HKLYGFID S   PPK+I  P   S+S+T QT+S ++T  SNP +EDW AKDQA M LINATLSVEAL YVVG  SS QV K LE++YSS+T++N
Subjt:  PPLRTHKLYGFIDGSNVAPPKSIFAP--PSTSSTPQTSSPTSTLTSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSN

Query:  IVSLKTDLQSV
        IV+LK+DLQ +
Subjt:  IVSLKTDLQSV

A0A6J1D9L6 uncharacterized protein LOC1110188925.5e-2358.72Show/hide
Query:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTLTSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIVSL
        L+ HKL+GFIDGS  AP + + +   T S P T+  TS    NP FEDW+AKDQALM+LINATLS EALAYVV   +SKQV +VLEK+YSS++++N+V+L
Subjt:  LRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTLTSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSSSTKSNIVSL

Query:  KTDLQSVIE
        K+DLQS+++
Subjt:  KTDLQSVIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTATGAGAAACAAATCTTATGGATGAAAAATCATCTACCTTGGCCTCCACCTCTAAGGACTCACAAACTCTATGGTTTTATTGATGGATCCAATGTCGCCCCTCC
AAAATCAATCTTTGCTCCACCATCGACCTCATCTACACCACAAACTTCATCTCCGACATCAACGCTCACCTCAAACCCTTTATTCGAAGACTGGTTAGCAAAAGACCAAG
CACTAATGTCACTTATCAATGCTACCTTATCCGTTGAAGCACTTGCTTATGTAGTCGGCTATAGTTCATCGAAACAAGTCGGGAAAGTCTTAGAGAAATACTATTCCTCA
AGCACCAAGTCAAATATAGTCAGTCTAAAGACCGATCTTCAATCAGTCATAGAAACCGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTATGAGAAACAAATCTTATGGATGAAAAATCATCTACCTTGGCCTCCACCTCTAAGGACTCACAAACTCTATGGTTTTATTGATGGATCCAATGTCGCCCCTCC
AAAATCAATCTTTGCTCCACCATCGACCTCATCTACACCACAAACTTCATCTCCGACATCAACGCTCACCTCAAACCCTTTATTCGAAGACTGGTTAGCAAAAGACCAAG
CACTAATGTCACTTATCAATGCTACCTTATCCGTTGAAGCACTTGCTTATGTAGTCGGCTATAGTTCATCGAAACAAGTCGGGAAAGTCTTAGAGAAATACTATTCCTCA
AGCACCAAGTCAAATATAGTCAGTCTAAAGACCGATCTTCAATCAGTCATAGAAACCGGATGA
Protein sequenceShow/hide protein sequence
MAYEKQILWMKNHLPWPPPLRTHKLYGFIDGSNVAPPKSIFAPPSTSSTPQTSSPTSTLTSNPLFEDWLAKDQALMSLINATLSVEALAYVVGYSSSKQVGKVLEKYYSS
STKSNIVSLKTDLQSVIETG