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PI0009227 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009227
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:22415858..22416314
RNA-Seq ExpressionPI0009227
SyntenyPI0009227
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047166.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-4469.75Show/hide
Query:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        M EKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCIIAEKELFDNWV+SHP AKGLLNK FP+YD+L+YVF +DRA+G   ETF D
Subjt:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

Query:  VGWNVPGGYKGFPADDAND
        VG N PGGY  F   D N+
Subjt:  VGWNVPGGYKGFPADDAND

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-4471.67Show/hide
Query:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        MAEKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCIIAEKELFDNWV+SHP AKGLLNK FP+YD+L+YVFG+DRA G   ETFAD
Subjt:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

Query:  VGWNVP-GGYKGFPADDAND
        VG N P GGY  F   D N+
Subjt:  VGWNVP-GGYKGFPADDAND

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]8.0e-4567.72Show/hide
Query:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        M  KLPGCN+  +  ID +IK LKR++QAIAEM  PSCSGFGWND+ KCIIAEKE FDNWV+SHP AKGLLNK FP+YD  +YVFGKDRA+GA  ETFAD
Subjt:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

Query:  VGWNVPGGYKGFPADDANDPETLMMDS
        VG NVP G++ FP  D ND E   M S
Subjt:  VGWNVPGGYKGFPADDANDPETLMMDS

XP_031743896.1 uncharacterized protein LOC116404722 [Cucumis sativus]7.2e-4671.43Show/hide
Query:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        M  KLPGCN+  +  IDC IK LKR++QAIAEMHDPSCSGFGWND+ KCI+AEKELFDNWV+SH  AKGLLNK FP+YD L+Y+FGKDRA GA  ETFAD
Subjt:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

Query:  VGWNVPGGYKGFPADDAND
        VG NVP G++ FP  D ND
Subjt:  VGWNVPGGYKGFPADDAND

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]7.2e-4666.93Show/hide
Query:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        M  KLPGCN+  +  IDC+IK LKR++Q IAEM  PSC GFGWND+ KCI+AEKELFDNWV+SHP AKGLLNK FP+YD+L+YVFGKDRA+G   ETFAD
Subjt:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

Query:  VGWNVPGGYKGFPADDANDPETLMMDS
        VG NVP G++ FP  D ND E   M S
Subjt:  VGWNVPGGYKGFPADDANDPETLMMDS

TrEMBL top hitse value%identityAlignment
A0A5A7TRV1 Retrotransposon protein1.5e-4470.83Show/hide
Query:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        MAEKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCI+AEKELFDNWV+SHP AKGLLNK FP+YD+L+YVFG+DRA G   ETFAD
Subjt:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

Query:  VGWNVP-GGYKGFPADDAND
        VG N P GGY  F   D N+
Subjt:  VGWNVP-GGYKGFPADDAND

A0A5A7TYW0 Retrotransposon protein1.1e-4469.75Show/hide
Query:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        M EKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCIIAEKELFDNWV+SHP AKGLLNK FP+YD+L+YVF +DRA+G   ETF D
Subjt:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

Query:  VGWNVPGGYKGFPADDAND
        VG N PGGY  F   D N+
Subjt:  VGWNVPGGYKGFPADDAND

A0A5A7V6Q9 Retrotransposon protein1.1e-4470.83Show/hide
Query:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        MA+KLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCI+AEKELFDNWV+SHP AKGLLNKSFP+YD+L+YVFG+DRA G   ETFAD
Subjt:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

Query:  VGWNVP-GGYKGFPADDAND
        VG N P GGY  F   D N+
Subjt:  VGWNVP-GGYKGFPADDAND

A0A5A7VES2 Retrotransposon protein1.1e-4471.67Show/hide
Query:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        MAEKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCIIAEKELFDNWV+SHP AKGLLNK FP+YD+L+YVFG+DRA G   ETFAD
Subjt:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

Query:  VGWNVP-GGYKGFPADDAND
        VG N P GGY  F   D N+
Subjt:  VGWNVP-GGYKGFPADDAND

A0A5D3CWL2 Retrotransposon protein1.5e-4470.83Show/hide
Query:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        MAEKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCI+AEKELFDNWV+SHP AKGLLNK FP+YD+L+YVFG+DRA G   ETFAD
Subjt:  MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

Query:  VGWNVP-GGYKGFPADDAND
        VG N P GGY  F   D N+
Subjt:  VGWNVP-GGYKGFPADDAND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein5.0e-0536.96Show/hide
Query:  GFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVF
        GF W++    I A+  ++D+++K HP+A+    KS P Y+DL  +F
Subjt:  GFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVF

AT2G24960.2 unknown protein5.9e-0629.63Show/hide
Query:  SGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIG
        +GF W+     +IA+ ++++ ++++HP A+    K+ P Y +L ++FGK+ + G
Subjt:  SGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIG

AT4G02210.1 unknown protein5.9e-0624.18Show/hide
Query:  IQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        + G   +  + K L+  F+++  +      GF W+D  + ++A+  ++D ++K HP ++    KS P Y DL  V+    +    EE+ ++
Subjt:  IQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD

AT4G02210.2 unknown protein5.9e-0624.18Show/hide
Query:  IQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD
        + G   +  + K L+  F+++  +      GF W+D  + ++A+  ++D ++K HP ++    KS P Y DL  V+    +    EE+ ++
Subjt:  IQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAAAAGCTGCCAGGATGTAACATCCAGGGTTCGCCAACAATAGACTGTCAGATAAAAATCCTTAAGAGAACGTTCCAAGCCATTGCAGAAATGCACGACCCATC
CTGCAGTGGGTTTGGATGGAACGATGAATTCAAGTGCATCATCGCTGAGAAGGAATTGTTCGACAATTGGGTGAAGAGTCATCCTGTCGCAAAGGGCCTCCTCAATAAAT
CCTTTCCCCATTACGATGACCTATCCTACGTATTTGGGAAAGATCGTGCTATTGGAGCACGCGAAGAGACATTCGCCGATGTGGGGTGGAATGTGCCAGGAGGGTACAAG
GGATTTCCTGCCGACGATGCTAACGATCCAGAGACCCTTATGATGGATAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAAAAGCTGCCAGGATGTAACATCCAGGGTTCGCCAACAATAGACTGTCAGATAAAAATCCTTAAGAGAACGTTCCAAGCCATTGCAGAAATGCACGACCCATC
CTGCAGTGGGTTTGGATGGAACGATGAATTCAAGTGCATCATCGCTGAGAAGGAATTGTTCGACAATTGGGTGAAGAGTCATCCTGTCGCAAAGGGCCTCCTCAATAAAT
CCTTTCCCCATTACGATGACCTATCCTACGTATTTGGGAAAGATCGTGCTATTGGAGCACGCGAAGAGACATTCGCCGATGTGGGGTGGAATGTGCCAGGAGGGTACAAG
GGATTTCCTGCCGACGATGCTAACGATCCAGAGACCCTTATGATGGATAGTTAA
Protein sequenceShow/hide protein sequence
MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVPGGYK
GFPADDANDPETLMMDS