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PI0009248 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009248
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr04:20011748..20012122
RNA-Seq ExpressionPI0009248
SyntenyPI0009248
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040633.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.2e-3364.52Show/hide
Query:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM
        +AK TYK EQ TITTKK NE D LNG+ENDELT Q K E   +E+IA+PQEK S P VLRYIPL + KKGESPF+E S+ LT+G +EILKESFT P+TK+
Subjt:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM

Query:  DKGETKRIEKESIKACLPEKRTTE
        DKGE KR+EK   KA L  K+T +
Subjt:  DKGETKRIEKESIKACLPEKRTTE

KAA0046553.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.4e-3058.87Show/hide
Query:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM
        + K T+K EQ  IT+KK+N+ D LN ++N ELT + K   P  E+IA  Q++ S PPVLRYIPLS+RKKGESPFAE S+ LTI   EILKE+FTTP+TK+
Subjt:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM

Query:  DKGETKRIEKESIKACLPEKRTTE
        +KGE K+IEK+ ++A LPE+RT E
Subjt:  DKGETKRIEKESIKACLPEKRTTE

KAA0050590.1 gypsy-like retrotransposase [Cucumis melo var. makuwa]3.5e-2959.68Show/hide
Query:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM
        MAK  YK EQ  ITTKK NE D LNG+ NDE   Q KSE   +E+IA+PQE+ S   +LRYIPLS+ KKGESPF E S+ LTI  +EI KE+FTT +TK+
Subjt:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM

Query:  DKGETKRIEKESIKACLPEKRTTE
        DK E KR+EK S++ CL E+RT E
Subjt:  DKGETKRIEKESIKACLPEKRTTE

KAA0059874.1 uncharacterized protein E6C27_scaffold108G001620 [Cucumis melo var. makuwa]6.0e-2958.06Show/hide
Query:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM
        +AK TYK EQ  IT KKSN+ D  NG++NDE   Q KS  P  E+IA+ Q++ S P VLRYIPLS+ KKGESPFA+ S+ LTIG +EILKE+FT P+TK+
Subjt:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM

Query:  DKGETKRIEKESIKACLPEKRTTE
        +K E K++EK+ ++ACL E+RT E
Subjt:  DKGETKRIEKESIKACLPEKRTTE

TYK28705.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-2958.87Show/hide
Query:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM
        + K T+K EQ  IT+KKSN+ D LN ++N E T + K   P  E+IA  Q++ S PPVLRYIPLS+RKKGESPFAE S+ LTI   EILKE+FTTP+TK+
Subjt:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM

Query:  DKGETKRIEKESIKACLPEKRTTE
        +KGE K+IEK+ ++A LPE+RT E
Subjt:  DKGETKRIEKESIKACLPEKRTTE

TrEMBL top hitse value%identityAlignment
A0A5A7TSN4 Ty3-gypsy retrotransposon protein2.6e-3058.87Show/hide
Query:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM
        + K T+K EQ  IT+KK+N+ D LN ++N ELT + K   P  E+IA  Q++ S PPVLRYIPLS+RKKGESPFAE S+ LTI   EILKE+FTTP+TK+
Subjt:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM

Query:  DKGETKRIEKESIKACLPEKRTTE
        +KGE K+IEK+ ++A LPE+RT E
Subjt:  DKGETKRIEKESIKACLPEKRTTE

A0A5D3C2W0 Putative mitochondrial protein2.5e-3364.52Show/hide
Query:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM
        +AK TYK EQ TITTKK NE D LNG+ENDELT Q K E   +E+IA+PQEK S P VLRYIPL + KKGESPF+E S+ LT+G +EILKESFT P+TK+
Subjt:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM

Query:  DKGETKRIEKESIKACLPEKRTTE
        DKGE KR+EK   KA L  K+T +
Subjt:  DKGETKRIEKESIKACLPEKRTTE

A0A5D3C939 Gypsy-like retrotransposase1.7e-2959.68Show/hide
Query:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM
        MAK  YK EQ  ITTKK NE D LNG+ NDE   Q KSE   +E+IA+PQE+ S   +LRYIPLS+ KKGESPF E S+ LTI  +EI KE+FTT +TK+
Subjt:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM

Query:  DKGETKRIEKESIKACLPEKRTTE
        DK E KR+EK S++ CL E+RT E
Subjt:  DKGETKRIEKESIKACLPEKRTTE

A0A5D3DMI1 Uncharacterized protein2.9e-2958.06Show/hide
Query:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM
        +AK TYK EQ  IT KKSN+ D  NG++NDE   Q KS  P  E+IA+ Q++ S P VLRYIPLS+ KKGESPFA+ S+ LTIG +EILKE+FT P+TK+
Subjt:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM

Query:  DKGETKRIEKESIKACLPEKRTTE
        +K E K++EK+ ++ACL E+RT E
Subjt:  DKGETKRIEKESIKACLPEKRTTE

A0A5D3DZE5 Ty3-gypsy retrotransposon protein5.8e-3058.87Show/hide
Query:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM
        + K T+K EQ  IT+KKSN+ D LN ++N E T + K   P  E+IA  Q++ S PPVLRYIPLS+RKKGESPFAE S+ LTI   EILKE+FTTP+TK+
Subjt:  MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKM

Query:  DKGETKRIEKESIKACLPEKRTTE
        +KGE K+IEK+ ++A LPE+RT E
Subjt:  DKGETKRIEKESIKACLPEKRTTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAGACACTTATAAGCTCGAGCAAAGAACGATCACAACGAAGAAGTCAAATGAAGTGGATGTACTCAATGGTCGAGAGAATGATGAACTAACGATCCAAGTTAA
GTCTGAAATGCCAGCAAACGAAAGGATAGCGGTCCCTCAAGAAAAAGCCTCAAAACCTCCTGTTTTACGCTACATTCCACTGTCTCAACGTAAGAAGGGAGAATCACCAT
TTGCAGAAGGTTCGCAAAAATTAACGATTGGAGGCGTCGAGATATTAAAGGAAAGCTTCACCACACCAATTACCAAGATGGATAAAGGAGAGACGAAAAGAATTGAGAAA
GAGAGCATAAAAGCATGTCTTCCAGAAAAACGAACGACAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAAGACACTTATAAGCTCGAGCAAAGAACGATCACAACGAAGAAGTCAAATGAAGTGGATGTACTCAATGGTCGAGAGAATGATGAACTAACGATCCAAGTTAA
GTCTGAAATGCCAGCAAACGAAAGGATAGCGGTCCCTCAAGAAAAAGCCTCAAAACCTCCTGTTTTACGCTACATTCCACTGTCTCAACGTAAGAAGGGAGAATCACCAT
TTGCAGAAGGTTCGCAAAAATTAACGATTGGAGGCGTCGAGATATTAAAGGAAAGCTTCACCACACCAATTACCAAGATGGATAAAGGAGAGACGAAAAGAATTGAGAAA
GAGAGCATAAAAGCATGTCTTCCAGAAAAACGAACGACAGAGTGA
Protein sequenceShow/hide protein sequence
MAKDTYKLEQRTITTKKSNEVDVLNGRENDELTIQVKSEMPANERIAVPQEKASKPPVLRYIPLSQRKKGESPFAEGSQKLTIGGVEILKESFTTPITKMDKGETKRIEK
ESIKACLPEKRTTE