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PI0009285 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009285
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr10:3310027..3310482
RNA-Seq ExpressionPI0009285
SyntenyPI0009285
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.5e-4576.09Show/hide
Query:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ
        MA  S +SDL+       ES  S N  VPTSTLFLLSNICNLVPI LDSTNYVLWKYQVSSILKAHSLFGH+D++LPCP KHL S T   + EINP+YLQ
Subjt:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ

Query:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE
        WLSRDQALITLINATLSSSAL HVVGSV+SK LWLSLE
Subjt:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.3e-4678.99Show/hide
Query:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ
        MA  SS+SDL P     I  S S N SVPTSTLFLLSNICNLVPI LDSTNYVLWKYQVSSILKAHSLFGH+D++LPCP KHL S T   + EINPEYLQ
Subjt:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ

Query:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE
        WLSRDQALITLIN TLSSSALAHVV SVSSK LWLSLE
Subjt:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-4776.81Show/hide
Query:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ
        MA  SS+SDL+      +ES  S N+ VPTSTLFLLSNICNLVPI LDSTNY+LWKYQVSSILKAHS FGH+D++LPCP KHL+S T   + EINPEYLQ
Subjt:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ

Query:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE
        WLSR QALITLINATLSSSALAHVVGSVSSK LWLSLE
Subjt:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.6e-4676.81Show/hide
Query:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ
        MA  S +SDL+       ES  S N  VPTSTLFLLSNICNLVPI LDSTNYVLWKYQVSSILKAHSLFGH+D++LPCP KHL S T   + EINPEYLQ
Subjt:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ

Query:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE
        WLSRDQALITLINATLSSSAL HVVGSV+SK LWLSLE
Subjt:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE

TYK11141.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.0e-4685.34Show/hide
Query:  SGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQWLSRDQALITLINATLSSSALA
        S N SVPTSTLFLLSNICNLVPI LDSTNYVLWKYQVSSILKAHSLFGH+D++LPCP KH  S T   + EINPEY+QWLSRDQALITLINATLSSSALA
Subjt:  SGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQWLSRDQALITLINATLSSSALA

Query:  HVVGSVSSKDLWLSLE
        HVVGSVSSK LWLSLE
Subjt:  HVVGSVSSKDLWLSLE

TrEMBL top hitse value%identityAlignment
A0A5A7UTE5 Putative mitochondrial protein1.2e-4576.09Show/hide
Query:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ
        MA  S +SDL+       ES  S N  VPTSTLFLLSNICNLVPI LDSTNYVLWKYQVSSILKAHSLFGH+D++LPCP KHL S T   + EINP+YLQ
Subjt:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ

Query:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE
        WLSRDQALITLINATLSSSAL HVVGSV+SK LWLSLE
Subjt:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE

A0A5A7UZE5 Putative mitochondrial protein1.1e-4678.99Show/hide
Query:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ
        MA  SS+SDL P     I  S S N SVPTSTLFLLSNICNLVPI LDSTNYVLWKYQVSSILKAHSLFGH+D++LPCP KHL S T   + EINPEYLQ
Subjt:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ

Query:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE
        WLSRDQALITLIN TLSSSALAHVV SVSSK LWLSLE
Subjt:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE

A0A5A7VGG0 Retrotransposon protein2.2e-4776.81Show/hide
Query:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ
        MA  SS+SDL+      +ES  S N+ VPTSTLFLLSNICNLVPI LDSTNY+LWKYQVSSILKAHS FGH+D++LPCP KHL+S T   + EINPEYLQ
Subjt:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ

Query:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE
        WLSR QALITLINATLSSSALAHVVGSVSSK LWLSLE
Subjt:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE

A0A5D3BEU0 Putative mitochondrial protein4.1e-4676.81Show/hide
Query:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ
        MA  S +SDL+       ES  S N  VPTSTLFLLSNICNLVPI LDSTNYVLWKYQVSSILKAHSLFGH+D++LPCP KHL S T   + EINPEYLQ
Subjt:  MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQ

Query:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE
        WLSRDQALITLINATLSSSAL HVVGSV+SK LWLSLE
Subjt:  WLSRDQALITLINATLSSSALAHVVGSVSSKDLWLSLE

A0A5D3CH60 Putative mitochondrial protein2.4e-4685.34Show/hide
Query:  SGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQWLSRDQALITLINATLSSSALA
        S N SVPTSTLFLLSNICNLVPI LDSTNYVLWKYQVSSILKAHSLFGH+D++LPCP KH  S T   + EINPEY+QWLSRDQALITLINATLSSSALA
Subjt:  SGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQWLSRDQALITLINATLSSSALA

Query:  HVVGSVSSKDLWLSLE
        HVVGSVSSK LWLSLE
Subjt:  HVVGSVSSKDLWLSLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTCTAGCTCAGAATCCGATCTCACCCCAATCATCCCAACCTCCATCGAATCATCTCATTCAGGCAATACCTCTGTCCCTACGTCCACTCTCTTCTTACTATC
CAATATTTGCAATCTTGTACCTATTTGTTTAGATTCCACCAATTACGTCCTCTGGAAGTATCAAGTCTCCTCTATTCTCAAAGCACACTCTCTTTTTGGCCACCTTGATG
AATCCCTGCCCTGCCCATCCAAACATCTTGCCTCACCCACCGCTGATGCCCACCCGGAAATTAATCCAGAATATCTCCAATGGCTTTCTCGTGACCAAGCCCTCATAACT
CTCATCAACGCTACATTATCGTCCTCTGCCCTTGCTCATGTAGTCGGTTCTGTCTCTTCCAAAGATTTATGGCTTTCTCTTGAAAACGATACTCCTCCAACACCAGATCC
AACATCCTTGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCTCTAGCTCAGAATCCGATCTCACCCCAATCATCCCAACCTCCATCGAATCATCTCATTCAGGCAATACCTCTGTCCCTACGTCCACTCTCTTCTTACTATC
CAATATTTGCAATCTTGTACCTATTTGTTTAGATTCCACCAATTACGTCCTCTGGAAGTATCAAGTCTCCTCTATTCTCAAAGCACACTCTCTTTTTGGCCACCTTGATG
AATCCCTGCCCTGCCCATCCAAACATCTTGCCTCACCCACCGCTGATGCCCACCCGGAAATTAATCCAGAATATCTCCAATGGCTTTCTCGTGACCAAGCCCTCATAACT
CTCATCAACGCTACATTATCGTCCTCTGCCCTTGCTCATGTAGTCGGTTCTGTCTCTTCCAAAGATTTATGGCTTTCTCTTGAAAACGATACTCCTCCAACACCAGATCC
AACATCCTTGATTTAA
Protein sequenceShow/hide protein sequence
MAASSSESDLTPIIPTSIESSHSGNTSVPTSTLFLLSNICNLVPICLDSTNYVLWKYQVSSILKAHSLFGHLDESLPCPSKHLASPTADAHPEINPEYLQWLSRDQALIT
LINATLSSSALAHVVGSVSSKDLWLSLENDTPPTPDPTSLI