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PI0009290 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009290
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDynein light chain
Genome locationchr11:4115551..4118678
RNA-Seq ExpressionPI0009290
SyntenyPI0009290
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150499.1 dynein light chain 1, cytoplasmic [Cucumis sativus]1.4e-5696.58Show/hide
Query:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQG  +VKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQK+AIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_008458417.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo]1.7e-5798.29Show/hide
Query:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVKSVSEDRKPPAVT TGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022959519.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]6.0e-5595.73Show/hide
Query:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVKSVSEDRKP AV TTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023513722.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]1.0e-5494.02Show/hide
Query:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVKSVSEDRKP AV TTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_038906782.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]4.9e-5797.44Show/hide
Query:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVKSVSEDRKPPAV TTGKKIVIKSADMFGDVQKEAI+VAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A0A0KCI4 Dynein light chain6.9e-5796.58Show/hide
Query:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQG  +VKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQK+AIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A1S3C7T8 Dynein light chain8.2e-5898.29Show/hide
Query:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVKSVSEDRKPPAVT TGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1EQC6 Dynein light chain1.1e-5493.16Show/hide
Query:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVK+VSEDRKP AV TTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1H8A5 Dynein light chain2.9e-5595.73Show/hide
Query:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVKSVSEDRKP AV TTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1KH59 Dynein light chain1.4e-5492.31Show/hide
Query:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVK+VSEDRKP AV TTGKKIVIKSADMFGDVQKEA+D+AI AFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic1.8e-3070.93Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AID A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic3.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q78P75 Dynein light chain 2, cytoplasmic3.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic3.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic3.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein5.5e-1458.49Show/hide
Query:  KDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        K +A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  KDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.9e-1141.18Show/hide
Query:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVE--KDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K +++ +DM   +Q +A+  A  A +   V   K IA  IKKEFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVE--KDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein1.5e-4068.6Show/hide
Query:  KRSIQGNPMVKSVSEDRK---------PPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTH
        K+S+ G    +++ +DR+         PPA    GK+ VIKSADM  D+QKEAI++AI+AFEK+SVEKDIAE IKKEFDK+HG TWHCIVGRNFGSYVTH
Subjt:  KRSIQGNPMVKSVSEDRK---------PPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTH

Query:  ETNHFVYFYLDQKAVLLFKSG
        ETNHFVYFYLDQKAVLLFKSG
Subjt:  ETNHFVYFYLDQKAVLLFKSG

AT4G27360.1 Dynein light chain type 1 family protein5.7e-1140Show/hide
Query:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVEK--DIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K V+   DM   ++++A+ +A  A +   V +   IA  IKKEFD+ +G  W CIVG +FGS+VTH +  F++F +    +LLFK
Subjt:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVEK--DIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT5G20110.1 Dynein light chain type 1 family protein4.9e-1551.19Show/hide
Query:  IKSADMFGDVQKEAIDVA---IAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        I +ADM G +Q  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF +D+  VLLFK+
Subjt:  IKSADMFGDVQKEAIDVA---IAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAACGATGCTAAGAGAAGCATTCAAGGGAATCCAATGGTGAAATCTGTGTCGGAAGATCGGAAACCACCGGCTGTGACGACTACTGGGAAGAAAATTGTTATCAA
GAGTGCCGATATGTTTGGTGATGTGCAGAAAGAGGCTATCGATGTCGCTATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATATAGCAGAGTGTATTAAGAAAGAGT
TTGATAAGAGACATGGACCGACCTGGCACTGCATTGTTGGCCGTAATTTTGGTTCGTACGTGACACACGAGACAAACCACTTCGTTTACTTCTACTTGGATCAGAAAGCA
GTTTTATTGTTCAAATCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
TCTTGTTCTAGTTCTACTAGCTCTCCAAAGACCGGAAAACGACGCCGTATTGCCAGGCTGTACCGGAAAAGCAAAATTTACCGACGGCTCCATTAAAAGGACCAGATTGC
AAAAAGCCGTAATAAATTCCAAAAAGAGTTAAAAATCACTTTATCCTCTCAGATTCTGAGAGAACTCACGAGCTTTCCTTACAATTTCCACTCAAATCGATGAACTAATT
CCAAATTTCTCCAAACAACAAGAACAACTTGAACAGATTGATTCCATATACCGTCGCTTCAGAACCGGCACCGGAGATCAGCAGAAAAAATGAGTAACGATGCTAAGAGA
AGCATTCAAGGGAATCCAATGGTGAAATCTGTGTCGGAAGATCGGAAACCACCGGCTGTGACGACTACTGGGAAGAAAATTGTTATCAAGAGTGCCGATATGTTTGGTGA
TGTGCAGAAAGAGGCTATCGATGTCGCTATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATATAGCAGAGTGTATTAAGAAAGAGTTTGATAAGAGACATGGACCGA
CCTGGCACTGCATTGTTGGCCGTAATTTTGGTTCGTACGTGACACACGAGACAAACCACTTCGTTTACTTCTACTTGGATCAGAAAGCAGTTTTATTGTTCAAATCTGGT
TGATAAACATGTATATTATGCAGATTAATGAATTTTATTAACTGATTTTATGATCATCGCAGTTTAATCAAATGATGATATCCTTTGTGGACAAGACAGCCTTCCCTTTT
TCCACCTCTCTTTTTTCTCGTATCTAATGATTTTGCTTAGGACACTTTAGCCTTTAAATTAGACATAATCAGCTTTGTTCACACGCATTCTGTTCAAAAGTAGTTTTCAT
TTTCCTCCATGTTGATTGCATTTGTTGCAGTTCTATATTATCACGGGTTTCGACCTGATACATTTCTACTACGATAGTCTGAATTCATTTCGAGTCATTGACGTGAAA
Protein sequenceShow/hide protein sequence
MSNDAKRSIQGNPMVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA
VLLFKSG