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PI0009299 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009299
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:14186339..14187939
RNA-Seq ExpressionPI0009299
SyntenyPI0009299
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.5e-5361.93Show/hide
Query:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------
        MTENSQ+FGNRA ELDN LTKEVSE KSQMLNMTTLLTSF+QG P+KV KCGVC LVGHPNDKCP++IE+ N++R                         
Subjt:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------

Query:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK--TKLTNHRSKGK
                      TNLED++KALATNTLSFQQEMKQQ+T LTTAISK++GKGKLPAQPD+ANVS ISLRSGKIL+TP+++EKK  +KL    SK +
Subjt:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK--TKLTNHRSKGK

KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-5364.13Show/hide
Query:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------
        M ENSQSFGNRAS+LDNSLTKEVSE KSQMLNMTTLLTSF+QG P+KV KCGVCGLVGHPNDKCP++IE+ NV+R                         
Subjt:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------

Query:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK
                      TNL+D++KALA NTLSFQQEMKQQIT LTTAISK++GKGKLPAQP+HANVS ISLRSGKIL+TP  + K+
Subjt:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.9e-5459.22Show/hide
Query:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------
        M ENSQSFGNRASELDNSLTKEVSE KSQMLNMTTLLTSF+QG P KV KCGVCGLVGHPNDKC  +IE+ N++R                         
Subjt:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------

Query:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKKTKLTNHRSKGKLVISQ
                      TNLED++KAL TNTLSFQQEMKQQ+T LTTAISK++GKGKLPAQPD+ANVS ISLRSGKIL+TP+++EKK +        ++   +
Subjt:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKKTKLTNHRSKGKLVISQ

Query:  GIQTPL
         I  PL
Subjt:  GIQTPL

KAA0066512.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.0e-5878.15Show/hide
Query:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR------TNLEDLVKALATNTLSFQQ
        M ENSQSFGNRASELDNSLTKEVSE KSQMLN+TTLLTSF+QG P+KV KCGVCGLVGHPNDKCP++IE+ N+++      TNLED++KALATNTLSFQQ
Subjt:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR------TNLEDLVKALATNTLSFQQ

Query:  EMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK
        EMKQQ+T LTTAISK++GKGKL  QPDHANVS ISLRSGKIL+TP+++EKK
Subjt:  EMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.2e-5565.22Show/hide
Query:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------
        M ENS+SFGNRASELDNSLTKEVSE KSQMLNMTTLLTSF+QG P KV KCGVCGLVGHPNDKCP +IE+ N++R                         
Subjt:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------

Query:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK
                      TNLED++KALATNTLSFQQ+MKQQ+T LTTAISK++GKGKLPAQPDHANVS ISLRSGKIL+TP+++EKK
Subjt:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK

TrEMBL top hitse value%identityAlignment
A0A5A7ULU1 Retrotransposon gag protein1.3e-5364.13Show/hide
Query:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------
        M ENSQSFGNRAS+LDNSLTKEVSE KSQMLNMTTLLTSF+QG P+KV KCGVCGLVGHPNDKCP++IE+ NV+R                         
Subjt:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------

Query:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK
                      TNL+D++KALA NTLSFQQEMKQQIT LTTAISK++GKGKLPAQP+HANVS ISLRSGKIL+TP  + K+
Subjt:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK

A0A5A7V0Q7 Retrotransposon gag protein3.3e-5459.22Show/hide
Query:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------
        M ENSQSFGNRASELDNSLTKEVSE KSQMLNMTTLLTSF+QG P KV KCGVCGLVGHPNDKC  +IE+ N++R                         
Subjt:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------

Query:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKKTKLTNHRSKGKLVISQ
                      TNLED++KAL TNTLSFQQEMKQQ+T LTTAISK++GKGKLPAQPD+ANVS ISLRSGKIL+TP+++EKK +        ++   +
Subjt:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKKTKLTNHRSKGKLVISQ

Query:  GIQTPL
         I  PL
Subjt:  GIQTPL

A0A5D3C4I5 Retrotransposon gag protein2.9e-5878.15Show/hide
Query:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR------TNLEDLVKALATNTLSFQQ
        M ENSQSFGNRASELDNSLTKEVSE KSQMLN+TTLLTSF+QG P+KV KCGVCGLVGHPNDKCP++IE+ N+++      TNLED++KALATNTLSFQQ
Subjt:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR------TNLEDLVKALATNTLSFQQ

Query:  EMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK
        EMKQQ+T LTTAISK++GKGKL  QPDHANVS ISLRSGKIL+TP+++EKK
Subjt:  EMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK

A0A5D3CB46 Retrotransposon gag protein3.0e-5565.22Show/hide
Query:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------
        M ENS+SFGNRASELDNSLTKEVSE KSQMLNMTTLLTSF+QG P KV KCGVCGLVGHPNDKCP +IE+ N++R                         
Subjt:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------

Query:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK
                      TNLED++KALATNTLSFQQ+MKQQ+T LTTAISK++GKGKLPAQPDHANVS ISLRSGKIL+TP+++EKK
Subjt:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK

E5GBZ4 Retrotransposon gag protein7.5e-5461.93Show/hide
Query:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------
        MTENSQ+FGNRA ELDN LTKEVSE KSQMLNMTTLLTSF+QG P+KV KCGVC LVGHPNDKCP++IE+ N++R                         
Subjt:  MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIR-------------------------

Query:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK--TKLTNHRSKGK
                      TNLED++KALATNTLSFQQEMKQQ+T LTTAISK++GKGKLPAQPD+ANVS ISLRSGKIL+TP+++EKK  +KL    SK +
Subjt:  --------------TNLEDLVKALATNTLSFQQEMKQQITHLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKK--TKLTNHRSKGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGAGAATTCCCAAAGCTTTGGAAATAGAGCATCCGAGCTCGACAATTCTCTAACCAAAGAAGTAAGTGAATTTAAGTCTCAAATGCTAAATATGACTACTTTACT
CACTTCTTTTATGCAAGGTGGCCCTGTAAAAGTTGCTAAGTGTGGGGTTTGCGGCCTAGTTGGACATCCAAATGACAAGTGCCCAGACTTAATTGAAGAAGCAAATGTCA
TTCGTACAAATCTTGAAGATTTAGTAAAAGCACTAGCTACTAATACTCTCTCTTTCCAACAAGAAATGAAGCAACAAATTACTCATCTCACAACCGCTATTAGTAAGTTG
GAAGGAAAAGGTAAACTTCCGGCCCAACCGGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGTGGTAAGATTCTTGAAACCCCTTCAAGTGAAGAAAAAAAGACAAA
ATTGACTAATCACAGATCCAAGGGCAAATTGGTAATCTCCCAAGGAATTCAAACTCCTCTTTGCGGCAAAGCTACTTCAGTATCGCTTGGCTCAAACGCATCCTGCCTTC
ACCGCAAGGCACTACCTTCAACCTTGAGCCTCGTGAGCACTTCATCCTGCAGAAGTATACAATTTGCTTCGCCACACACTCATTCAACACCTGCCCGCCAAAACTCTTCA
GCTGACTTAAGCTCGCAATCTACGTCGCATTCATCAGCTCACCTAAACTATGCAAGCAACATCAGAACGCGTAGCAATCTGCATAACCGTCAAGCCCACCAAAGCCCAAG
GCCCAAGCCCAAGGCCCAAGCCCATTGTAACAAAATAACCGCTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGAGAATTCCCAAAGCTTTGGAAATAGAGCATCCGAGCTCGACAATTCTCTAACCAAAGAAGTAAGTGAATTTAAGTCTCAAATGCTAAATATGACTACTTTACT
CACTTCTTTTATGCAAGGTGGCCCTGTAAAAGTTGCTAAGTGTGGGGTTTGCGGCCTAGTTGGACATCCAAATGACAAGTGCCCAGACTTAATTGAAGAAGCAAATGTCA
TTCGTACAAATCTTGAAGATTTAGTAAAAGCACTAGCTACTAATACTCTCTCTTTCCAACAAGAAATGAAGCAACAAATTACTCATCTCACAACCGCTATTAGTAAGTTG
GAAGGAAAAGGTAAACTTCCGGCCCAACCGGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGTGGTAAGATTCTTGAAACCCCTTCAAGTGAAGAAAAAAAGACAAA
ATTGACTAATCACAGATCCAAGGGCAAATTGGTAATCTCCCAAGGAATTCAAACTCCTCTTTGCGGCAAAGCTACTTCAGTATCGCTTGGCTCAAACGCATCCTGCCTTC
ACCGCAAGGCACTACCTTCAACCTTGAGCCTCGTGAGCACTTCATCCTGCAGAAGTATACAATTTGCTTCGCCACACACTCATTCAACACCTGCCCGCCAAAACTCTTCA
GCTGACTTAAGCTCGCAATCTACGTCGCATTCATCAGCTCACCTAAACTATGCAAGCAACATCAGAACGCGTAGCAATCTGCATAACCGTCAAGCCCACCAAAGCCCAAG
GCCCAAGCCCAAGGCCCAAGCCCATTGTAACAAAATAACCGCTAATTAG
Protein sequenceShow/hide protein sequence
MTENSQSFGNRASELDNSLTKEVSEFKSQMLNMTTLLTSFMQGGPVKVAKCGVCGLVGHPNDKCPDLIEEANVIRTNLEDLVKALATNTLSFQQEMKQQITHLTTAISKL
EGKGKLPAQPDHANVSVISLRSGKILETPSSEEKKTKLTNHRSKGKLVISQGIQTPLCGKATSVSLGSNASCLHRKALPSTLSLVSTSSCRSIQFASPHTHSTPARQNSS
ADLSSQSTSHSSAHLNYASNIRTRSNLHNRQAHQSPRPKPKAQAHCNKITAN