CuGenDBv2

Gene ID	PI0009300
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr02:15116916..15117365
RNA-Seq Expression	PI0009300
Synteny	PI0009300
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036729.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.0e-59

83.22

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Query:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE
        MTS+GNTSKA SDIGKRPNTRSRSR+ QS E+ P FEVAKNIWE++S+PPKGGI+IKENP IDEH+SS EHS EEMPH NIMSVMVTDVDTSENRMAELE
Subjt:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE

Query:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ
        KKVNML+ AVEERDYEIASLKNHIE+HDAAESSHT+ IKN +KGKAI+Q
Subjt:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

KAA0039098.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.8e-57

80.54

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Query:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE
        MTS+GNTSKA SDIGKRPNTRSRSRE QSSE++PPFEVAKNIWE++S+PPKGGI+IKEN  IDEH SSS+ SSEEMPH NIMSVMVT+VDTSENRMAELE
Subjt:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE

Query:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ
        KKVNML+  VEERDYEIA LKNHIE+ DAAESSH + +KN DKGKA++Q
Subjt:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

KAA0056121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.7e-57

80.54

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Query:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE
        MTS+GNTSKA SDIGKRPNTRSRSRE QSSE++PPFEVAKNIWE++S+PPKGGI+IKEN  IDEH SSS+ SSEEMPH NIMSVMVT+VDTSENRMAELE
Subjt:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE

Query:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ
        KKVNML+  VEERDYEIA LKNHIE+ DAAESSH + +KN DKGKA++Q
Subjt:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.1e-60

83.89

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Query:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE
        MTS+GNTSKA SDIGKRPNTRSRSR+ QS E+ P FEVAKNIWE++S+PPKGGI+IKENP IDEH+SS EHSSEEMPH NIMSVMVTDVDTSENRMAELE
Subjt:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE

Query:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ
        KKVNML+ AVEERDYEIASLKNHIE+HDAAESSHT+ IKN DKGK I+Q
Subjt:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

TYK14887.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.8e-57

80.54

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Query:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE
        MTS+GNTSKA SDIGKRPNTRSRSRE QSSE++PPFEVAKNIWE++S+PPKGGI+IKEN  IDEH SSS+ SSEEMPH NIMSVMVT+VDTSENRMAELE
Subjt:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE

Query:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ
        KKVNML+  VEERDYEIA LKNHIE+ DAAESSH + +KN DKGKA++Q
Subjt:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T5T3 Ty3-gypsy retrotransposon protein

5.0e-60

83.22

Show/hide

Query:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE
        MTS+GNTSKA SDIGKRPNTRSRSR+ QS E+ P FEVAKNIWE++S+PPKGGI+IKENP IDEH+SS EHS EEMPH NIMSVMVTDVDTSENRMAELE
Subjt:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE

Query:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ
        KKVNML+ AVEERDYEIASLKNHIE+HDAAESSHT+ IKN +KGKAI+Q
Subjt:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

A0A5A7T892 Ty3-gypsy retrotransposon protein

1.4e-57

80.54

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Query:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE
        MTS+GNTSKA SDIGKRPNTRSRSRE QSSE++PPFEVAKNIWE++S+PPKGGI+IKEN  IDEH SSS+ SSEEMPH NIMSVMVT+VDTSENRMAELE
Subjt:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE

Query:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ
        KKVNML+  VEERDYEIA LKNHIE+ DAAESSH + +KN DKGKA++Q
Subjt:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

A0A5A7URH1 Ty3-gypsy retrotransposon protein

1.8e-57

80.54

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Query:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE
        MTS+GNTSKA SDIGKRPNTRSRSRE QSSE++PPFEVAKNIWE++S+PPKGGI+IKEN  IDEH SSS+ SSEEMPH NIMSVMVT+VDTSENRMAELE
Subjt:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE

Query:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ
        KKVNML+  VEERDYEIA LKNHIE+ DAAESSH + +KN DKGKA++Q
Subjt:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

A0A5D3C857 Ty3-gypsy retrotransposon protein

1.0e-60

83.89

Show/hide

Query:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE
        MTS+GNTSKA SDIGKRPNTRSRSR+ QS E+ P FEVAKNIWE++S+PPKGGI+IKENP IDEH+SS EHSSEEMPH NIMSVMVTDVDTSENRMAELE
Subjt:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE

Query:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ
        KKVNML+ AVEERDYEIASLKNHIE+HDAAESSHT+ IKN DKGK I+Q
Subjt:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

A0A5D3CSH0 Ty3-gypsy retrotransposon protein

1.4e-57

80.54

Show/hide

Query:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE
        MTS+GNTSKA SDIGKRPNTRSRSRE QSSE++PPFEVAKNIWE++S+PPKGGI+IKEN  IDEH SSS+ SSEEMPH NIMSVMVT+VDTSENRMAELE
Subjt:  MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELE

Query:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ
        KKVNML+  VEERDYEIA LKNHIE+ DAAESSH + +KN DKGKA++Q
Subjt:  KKVNMLLNAVEERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACGTCTAGAGGCAACACTTCCAAAGCTCAAAGCGACATCGGTAAAAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGAATATACCACCCTTTGA
GGTTGCAAAGAATATTTGGGAAGAGTTGTCAGAGCCACCAAAAGGTGGAATTATAATAAAAGAAAACCCTGTGATTGATGAGCACGATTCGTCCTCTGAACACTCAAGTG
AGGAGATGCCTCACGCAAATATAATGTCGGTTATGGTGACTGATGTTGATACAAGTGAAAATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTAAATGCAGTT
GAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATAGAAACTCATGACGCTGCTGAATCAAGTCACACATATGCCATCAAGAATAAGGACAAAGGGAAGGCGAT
TTTGCAATAA

mRNA sequence

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Protein sequence

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MTSRGNTSKAQSDIGKRPNTRSRSREAQSSENIPPFEVAKNIWEELSEPPKGGIIIKENPVIDEHDSSSEHSSEEMPHANIMSVMVTDVDTSENRMAELEKKVNMLLNAV
EERDYEIASLKNHIETHDAAESSHTYAIKNKDKGKAILQ

PI0009300 (gene) of Melon (PI 482460) v1 genome