; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0009403 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009403
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:11480667..11482253
RNA-Seq ExpressionPI0009403
SyntenyPI0009403
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.7e-6367.35Show/hide
Query:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT
        MLNMTTLLTSFVQG+ +KV KCGVC LVGHPNDKCP+++E+  ++R YDP+ NTYN+ WRDNPNLRWGNDNQ+ +QA  +SS NQ TNLED++KALATNT
Subjt:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT

Query:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP
        LSFQQEMKQQ++ LTTAI K++GKGKLP Q DYANVSAISLRSGKIL+TP + E+KVTS  + L + +E KEEK+ETN  PS+S  +    N   P
Subjt:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-6366.33Show/hide
Query:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT
        MLNMTTLLTSFVQG+ +KV KCGVCGLVGHPNDKCP+++E+  ++R YDPH NTYN+ WRDNPNLRWGNDNQ+ +QA  S+S+NQ TNLED++KALATNT
Subjt:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT

Query:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP
        LSFQQEMKQQ++ LTTAI K++GKGKL  Q +YANVSA+SLRSGKIL+TP + E+K TS P+ L   +E KEEK+ETN  P +S  +    N   P
Subjt:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP

KAA0062356.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-6165.82Show/hide
Query:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT
        MLNMTTLLTSFVQG+ +KV KC VC L+ HPN+KC ++ E+  ++R YDPH NTYN+RWRDNPNLRWGNDNQ+ +QA  S+S+NQ TNLED++KA ATNT
Subjt:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT

Query:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPP-SEEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP
        LSFQQEMKQQ++ LTTAI K++GKGKL  QLD+ANVSAISLRSGKILETP   E+KVTS P+ L + +E KEEK+ETN  PS+S  +    N   P
Subjt:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPP-SEEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.0e-6468.02Show/hide
Query:  MLNM-TTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATN
        MLNM TTLLTSFVQG+ +KV KCGVCGLVGH N+KCP+++E+  ++R YDPHSNTYN+ WRDNPNLRWGNDNQ+ +QA  S+S+NQ TNLED++KALATN
Subjt:  MLNM-TTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATN

Query:  TLSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP
        TLSFQQEMKQQ++ LTTAI K++GKGKLP QLD+ANVSAISLRSGKIL+TP + E+KVTS P+ L + +E KEEK+ETN  PS+S  +    N   P
Subjt:  TLSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]3.6e-6165.31Show/hide
Query:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT
        MLNMTTLLTSFVQG+++KV KCGVCGLVG+PNDKCP ++E+  ++R YDPH NTYN  WRDNPNLRWGNDNQ+ +QA  +SS NQ TNLED++KALATNT
Subjt:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT

Query:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP
        LSFQQ+MKQQ++ LTT I K++GKGKLP Q D+ NVSAISLRSGKIL+TP + E+KVTS  + L + ++ KEEK+ETNS  S+S  +    N   P
Subjt:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032911.8e-6165.31Show/hide
Query:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT
        MLNMTTLLTSFVQG+++KV KCGVCGLVG+PNDKCP ++E+  ++R YDPH NTYN  WRDNPNLRWGNDNQ+ +QA  +SS NQ TNLED++KALATNT
Subjt:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT

Query:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP
        LSFQQ+MKQQ++ LTT I K++GKGKLP Q D+ NVSAISLRSGKIL+TP + E+KVTS  + L + ++ KEEK+ETNS  S+S  +    N   P
Subjt:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP

A0A5A7V7G2 Retrotransposon gag protein1.3e-6165.82Show/hide
Query:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT
        MLNMTTLLTSFVQG+ +KV KC VC L+ HPN+KC ++ E+  ++R YDPH NTYN+RWRDNPNLRWGNDNQ+ +QA  S+S+NQ TNLED++KA ATNT
Subjt:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT

Query:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPP-SEEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP
        LSFQQEMKQQ++ LTTAI K++GKGKL  QLD+ANVSAISLRSGKILETP   E+KVTS P+ L + +E KEEK+ETN  PS+S  +    N   P
Subjt:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPP-SEEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP

A0A5A7VQ60 Retrotransposon gag protein2.9e-6468.02Show/hide
Query:  MLNM-TTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATN
        MLNM TTLLTSFVQG+ +KV KCGVCGLVGH N+KCP+++E+  ++R YDPHSNTYN+ WRDNPNLRWGNDNQ+ +QA  S+S+NQ TNLED++KALATN
Subjt:  MLNM-TTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATN

Query:  TLSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP
        TLSFQQEMKQQ++ LTTAI K++GKGKLP QLD+ANVSAISLRSGKIL+TP + E+KVTS P+ L + +E KEEK+ETN  PS+S  +    N   P
Subjt:  TLSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP

A0A5D3CRR8 Retrotransposon gag protein1.4e-6366.33Show/hide
Query:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT
        MLNMTTLLTSFVQG+ +KV KCGVCGLVGHPNDKCP+++E+  ++R YDPH NTYN+ WRDNPNLRWGNDNQ+ +QA  S+S+NQ TNLED++KALATNT
Subjt:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT

Query:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP
        LSFQQEMKQQ++ LTTAI K++GKGKL  Q +YANVSA+SLRSGKIL+TP + E+K TS P+ L   +E KEEK+ETN  P +S  +    N   P
Subjt:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP

E5GBZ4 Retrotransposon gag protein8.4e-6467.35Show/hide
Query:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT
        MLNMTTLLTSFVQG+ +KV KCGVC LVGHPNDKCP+++E+  ++R YDP+ NTYN+ WRDNPNLRWGNDNQ+ +QA  +SS NQ TNLED++KALATNT
Subjt:  MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNT

Query:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP
        LSFQQEMKQQ++ LTTAI K++GKGKLP Q DYANVSAISLRSGKIL+TP + E+KVTS  + L + +E KEEK+ETN  PS+S  +    N   P
Subjt:  LSFQQEMKQQISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPS-EEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTCTACTAACTTCCTTTGTGCAAGGTAGCTCTGTGAAAGTTGCTAAGTGTGGGGTGTGCGGTCTAGTCGGACATCCAAATGACAAATGCCCAGA
CTTAGTTGAAGAAGCAAAAGTCATTCGTAATTACGATCCCCATAGTAATACTTACAATGCTCGGTGGAGAGACAACCCAAATCTAAGGTGGGGAAACGACAACCAAAGAC
CTTCACAAGCAACTACCTCTTCCTCTACTAATCAAGATACAAATTTAGAAGATCTAGTAAAAGCTCTAGCAACTAATACCCTCTCTTTCCAACAAGAAATGAAGCAACAA
ATTTCTCATCTCACAACCGCAATTGGCAAGTTAGAAGGGAAAGGCAAACTTCCGACCCAACTGGACTATGCTAATGTAAGTGCCATCTCACTTAGAAGTGGTAAGATTCT
CGAAACCCCTCCAAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTTGAAAATAATGATGAGAAAAAGGAAGAAAAATTAGAAACAAATTCTCTACCATCAAGTTCTA
ACAAAGAATTGCATGATGAGAATAAAGAGTTGCCTATGCAAAATATATTTTTCGGAAAGAAAATTGAGGAAAATAAAAAGTTGCTACAATGCAATATTGACTTTGCTTTA
GGAAAGAATGATTGTAAAAATTCTTTCTCCTCTCCACAAAATTCTATAATTGAACTTAACTCTACTTTCATTTTCCTCCTTGACCTTTTTAATGAAATTGCTTGTTTGCT
TGCTTCCACTAACCTTGACAATTCAAAGCACAAGCAAGCAAAGACAAGAACAATAAAGATGAATGGAGGAATCAAACCCAGGATAATAGATCCAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTCTACTAACTTCCTTTGTGCAAGGTAGCTCTGTGAAAGTTGCTAAGTGTGGGGTGTGCGGTCTAGTCGGACATCCAAATGACAAATGCCCAGA
CTTAGTTGAAGAAGCAAAAGTCATTCGTAATTACGATCCCCATAGTAATACTTACAATGCTCGGTGGAGAGACAACCCAAATCTAAGGTGGGGAAACGACAACCAAAGAC
CTTCACAAGCAACTACCTCTTCCTCTACTAATCAAGATACAAATTTAGAAGATCTAGTAAAAGCTCTAGCAACTAATACCCTCTCTTTCCAACAAGAAATGAAGCAACAA
ATTTCTCATCTCACAACCGCAATTGGCAAGTTAGAAGGGAAAGGCAAACTTCCGACCCAACTGGACTATGCTAATGTAAGTGCCATCTCACTTAGAAGTGGTAAGATTCT
CGAAACCCCTCCAAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTTGAAAATAATGATGAGAAAAAGGAAGAAAAATTAGAAACAAATTCTCTACCATCAAGTTCTA
ACAAAGAATTGCATGATGAGAATAAAGAGTTGCCTATGCAAAATATATTTTTCGGAAAGAAAATTGAGGAAAATAAAAAGTTGCTACAATGCAATATTGACTTTGCTTTA
GGAAAGAATGATTGTAAAAATTCTTTCTCCTCTCCACAAAATTCTATAATTGAACTTAACTCTACTTTCATTTTCCTCCTTGACCTTTTTAATGAAATTGCTTGTTTGCT
TGCTTCCACTAACCTTGACAATTCAAAGCACAAGCAAGCAAAGACAAGAACAATAAAGATGAATGGAGGAATCAAACCCAGGATAATAGATCCAGGTTGA
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGSSVKVAKCGVCGLVGHPNDKCPDLVEEAKVIRNYDPHSNTYNARWRDNPNLRWGNDNQRPSQATTSSSTNQDTNLEDLVKALATNTLSFQQEMKQQ
ISHLTTAIGKLEGKGKLPTQLDYANVSAISLRSGKILETPPSEEKVTSTPILLENNDEKKEEKLETNSLPSSSNKELHDENKELPMQNIFFGKKIEENKKLLQCNIDFAL
GKNDCKNSFSSPQNSIIELNSTFIFLLDLFNEIACLLASTNLDNSKHKQAKTRTIKMNGGIKPRIIDPG