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PI0009466 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009466
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr07:8925028..8927076
RNA-Seq ExpressionPI0009466
SyntenyPI0009466
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-0640.24Show/hide
Query:  MIGQQADKCPKLTKEVNAIRGFQKYDLYSNTFNAGGRDHPNMKWENQVEYDQKPFYIALPASSSFQ----EESLLASTTNAH
        ++G   DKCP++ ++VN +R   KYD Y NT+N+G RD+PN++W N    +QK  +   P +SS Q    E+ + A  TN H
Subjt:  MIGQQADKCPKLTKEVNAIRGFQKYDLYSNTFNAGGRDHPNMKWENQVEYDQKPFYIALPASSSFQ----EESLLASTTNAH

TQD95971.1 hypothetical protein C1H46_018458 [Malus baccata]5.5e-0634.86Show/hide
Query:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ-------VEYDQKPFYIALPASSSFQE----------ESLLAS
        M+G   D CP L      ++ NA+ GF     QKYD YSN +NAG RDHP++KW NQ         Y++ P +  +   + FQ           E L+AS
Subjt:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ-------VEYDQKPFYIALPASSSFQE----------ESLLAS

Query:  TTNAHPHHE
          N+   H+
Subjt:  TTNAHPHHE

XP_018501318.1 PREDICTED: uncharacterized protein LOC108866707 [Pyrus x bretschneideri]3.2e-0635.45Show/hide
Query:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ--------VEYDQKPFYIALPASSSFQE----------ESLLA
        M+G  AD CP L      ++ NA+ GF     QKYD YSN +NAG RDHP++KW NQ          Y++ P +      + FQ           E L+A
Subjt:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ--------VEYDQKPFYIALPASSSFQE----------ESLLA

Query:  STTNAHPHHE
        S  N+   H+
Subjt:  STTNAHPHHE

XP_018505695.1 PREDICTED: uncharacterized protein LOC103958266 [Pyrus x bretschneideri]9.3e-0634.55Show/hide
Query:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ--------VEYDQKPFYIALPASSSFQE----------ESLLA
        M+G   D CP L      ++ NA+ GF     QKYD YSN +NAG RDHP++KW NQ          Y++ P +      + FQ           E L+A
Subjt:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ--------VEYDQKPFYIALPASSSFQE----------ESLLA

Query:  STTNAHPHHE
        S  N+   H+
Subjt:  STTNAHPHHE

XP_028964974.1 uncharacterized protein LOC103440532 [Malus domestica]7.1e-0634.75Show/hide
Query:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ--------VEYDQKP-FYIALP---------ASSSFQEESLLA
        M+G   D CP L      ++ NA+ GF     QKYD YSN +NAG RDHP++KW NQ          Y++ P F+ A+P          + S   E L+A
Subjt:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ--------VEYDQKP-FYIALP---------ASSSFQEESLLA

Query:  STTNAHPHHEHGEISTVK
        S  N+   H+      +K
Subjt:  STTNAHPHHEHGEISTVK

TrEMBL top hitse value%identityAlignment
A0A540MB76 Uncharacterized protein2.6e-0634.86Show/hide
Query:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ-------VEYDQKPFYIALPASSSFQE----------ESLLAS
        M+G   D CP L      ++ NA+ GF     QKYD YSN +NAG RDHP++KW NQ         Y++ P +  +   + FQ           E L+AS
Subjt:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ-------VEYDQKPFYIALPASSSFQE----------ESLLAS

Query:  TTNAHPHHE
          N+   H+
Subjt:  TTNAHPHHE

A0A540MJX8 Uncharacterized protein4.5e-0634.55Show/hide
Query:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ--------VEYDQKPFYIALPASSSFQE----------ESLLA
        M+G   D CP L      ++ NA+ GF     QKYD YSN +NAG RDHP++KW NQ          Y++ P +      + FQ           E L+A
Subjt:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ--------VEYDQKPFYIALPASSSFQE----------ESLLA

Query:  STTNAHPHHE
        S  N+   H+
Subjt:  STTNAHPHHE

A0A5A7T4R3 Retrotransposon gag protein4.5e-0640.24Show/hide
Query:  MIGQQADKCPKLTKEVNAIRGFQKYDLYSNTFNAGGRDHPNMKWENQVEYDQKPFYIALPASSSFQ----EESLLASTTNAH
        ++G   DKCP++ ++VN +R   KYD Y NT+N+G RD+PN++W N    +QK  +   P +SS Q    E+ + A  TN H
Subjt:  MIGQQADKCPKLTKEVNAIRGFQKYDLYSNTFNAGGRDHPNMKWENQVEYDQKPFYIALPASSSFQ----EESLLASTTNAH

A0A5D3CX98 Retrotransposon gag protein7.7e-0656.82Show/hide
Query:  MIGQQADKCPKLTKEVNAIRGFQKYDLYSNTFNAGGRDHPNMKW
        ++G   D+CPKL KEV+A+ GF++ D  SNT+N+G RDHPN+KW
Subjt:  MIGQQADKCPKLTKEVNAIRGFQKYDLYSNTFNAGGRDHPNMKW

A0A5N5HXX9 Uncharacterized protein4.5e-0634.55Show/hide
Query:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ--------VEYDQKPFYIALPASSSFQE----------ESLLA
        M+G   D CP L      ++ NA+ GF     QKYD YSN +NAG RDHP++KW NQ          Y++ P +      + FQ           E L+A
Subjt:  MIGQQADKCPKL-----TKEVNAIRGF-----QKYDLYSNTFNAGGRDHPNMKWENQ--------VEYDQKPFYIALPASSSFQE----------ESLLA

Query:  STTNAHPHHE
        S  N+   H+
Subjt:  STTNAHPHHE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGACAACAAGCTGACAAGTGCCCCAAGCTTACCAAAGAGGTAAATGCCATAAGAGGCTTCCAAAAGTATGATCTCTATAGCAACACGTTTAATGCGGGAGGAAG
AGACCATCCAAACATGAAGTGGGAAAACCAAGTTGAATATGACCAAAAGCCCTTCTATATCGCTCTGCCTGCCTCCTCTTCCTTTCAAGAAGAATCTCTCCTTGCATCCA
CTACTAATGCCCATCCACATCATGAGCATGGAGAGATAAGTACGGTAAAAGCAGATGGAAGCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGGACAACAAGCTGACAAGTGCCCCAAGCTTACCAAAGAGGTAAATGCCATAAGAGGCTTCCAAAAGTATGATCTCTATAGCAACACGTTTAATGCGGGAGGAAG
AGACCATCCAAACATGAAGTGGGAAAACCAAGTTGAATATGACCAAAAGCCCTTCTATATCGCTCTGCCTGCCTCCTCTTCCTTTCAAGAAGAATCTCTCCTTGCATCCA
CTACTAATGCCCATCCACATCATGAGCATGGAGAGATAAGTACGGTAAAAGCAGATGGAAGCAAATAG
Protein sequenceShow/hide protein sequence
MIGQQADKCPKLTKEVNAIRGFQKYDLYSNTFNAGGRDHPNMKWENQVEYDQKPFYIALPASSSFQEESLLASTTNAHPHHEHGEISTVKADGSK