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PI0009469 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009469
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionFlap endonuclease 1
Genome locationchr11:15370796..15372315
RNA-Seq ExpressionPI0009469
SyntenyPI0009469
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006084 - XPG/Rad2 endonuclease
IPR006085 - XPG, N-terminal
IPR029060 - PIN-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1199161.1 Flap endonuclease 1 [Morella rubra]1.0e-2053.57Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAPK MKEQKFE+YFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+ T +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRYVRFINSS
        L+KRY++  ++S
Subjt:  LSKRYVRFINSS

XP_008450493.1 PREDICTED: flap endonuclease 1 isoform X3 [Cucumis melo]1.4e-2057.14Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAPKGMKEQKFETYFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+   +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRY
        L+KRY
Subjt:  LSKRY

XP_016503900.1 PREDICTED: flap endonuclease 1-A-like isoform X1 [Nicotiana tabacum]1.4e-2055.14Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAP+GMKEQKFE+YFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+ + +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRYVR
        L+KRY R
Subjt:  LSKRYVR

XP_016503903.1 PREDICTED: flap endonuclease 1-like isoform X4 [Nicotiana tabacum]1.4e-2055.14Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAP+GMKEQKFE+YFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+ + +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRYVR
        L+KRY R
Subjt:  LSKRYVR

XP_019228250.1 PREDICTED: flap endonuclease 1-A isoform X1 [Nicotiana attenuata]1.4e-2055.14Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAP+GMKEQKFE+YFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+ + +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRYVR
        L+KRY R
Subjt:  LSKRYVR

TrEMBL top hitse value%identityAlignment
A0A2P2JYH7 Flap endonuclease 13.0e-2154.46Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAPK MKEQKFE+YFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+ T +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRYVRFINSS
        LSKRY +  ++S
Subjt:  LSKRYVRFINSS

A0A2P2JYJ7 Flap endonuclease 13.0e-2154.46Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAPK MKEQKFE+YFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+ T +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRYVRFINSS
        LSKRY +  ++S
Subjt:  LSKRYVRFINSS

A0A5A7UBR8 Flap endonuclease 16.6e-2157.14Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAPKGMKEQKFETYFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+   +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRY
        L+KRY
Subjt:  LSKRY

A0A5D3CFP9 Flap endonuclease 16.6e-2157.14Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAPKGMKEQKFETYFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+   +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRY
        L+KRY
Subjt:  LSKRY

A0A6A1UFR9 Flap endonuclease 15.1e-2153.57Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAPK MKEQKFE+YFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+ T +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRYVRFINSS
        L+KRY++  ++S
Subjt:  LSKRYVRFINSS

SwissProt top hitse value%identityAlignment
A9U328 Flap endonuclease 1-B1.4e-2050.47Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAP  MKEQKFE+YFG KIAIDASMSIY F++VVGR+GT+MLTN     ++ + G+   +  V+    + +++          ++G E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRYVR
        L+KR  R
Subjt:  LSKRYVR

B4FHY0 Flap endonuclease 13.2e-2082.46Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQ
        MGI GLTKLLADNAPK MKEQKFE+YFG KIA+DASMSIYQF+IVVGR+G E LTN+
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQ

C5YUK3 Flap endonuclease 1-A2.4e-2084.21Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQ
        MGI GLTKLLADNAPK MKEQKFE+YFG KIAIDASMSIYQF+IVVGR+G E LTN+
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQ

C6TEX6 Flap endonuclease 17.5e-2254.29Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAPK MKE KFE+YFG KIAIDASMSIYQF+IVVGRSGTEMLTN+    ++ + G+ + +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRY
        L+KRY
Subjt:  LSKRY

O65251 Flap endonuclease 16.4e-2152.38Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAP  MKEQKFE+YFG KIA+DASMSIYQF+IVVGR+GTEMLTN+    ++ + G+   +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRY
        L+KRY
Subjt:  LSKRY

Arabidopsis top hitse value%identityAlignment
AT5G26680.1 5'-3' exonuclease family protein4.5e-2252.38Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAP  MKEQKFE+YFG KIA+DASMSIYQF+IVVGR+GTEMLTN+    ++ + G+   +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRY
        L+KRY
Subjt:  LSKRY

AT5G26680.2 5'-3' exonuclease family protein4.5e-2252.38Show/hide
Query:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE
        MGI GLTKLLADNAP  MKEQKFE+YFG KIA+DASMSIYQF+IVVGR+GTEMLTN+    ++ + G+   +  ++    + +++          L+ +E
Subjt:  MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRE

Query:  LSKRY
        L+KRY
Subjt:  LSKRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATCATGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCACAAAATCGCTATTGATGCTAGCAT
GAGTATTTATCAATTTATTATTGTTGTGGGTAGAAGTGGGACTGAGATGCTCACCAATCAAACAGATTGTTGGTCTGCGTTGGTGTGTGGTTTGAAAACAGGGAGTCGAA
ATGTCGTTTCAAGAAGATTCGAAAGCCTCCATATTTCAACCGAATCATTCCATTATAGCCTTACACTAGAAGGAAGAGAACTAAGCAAGAGGTATGTGAGATTTATCAAT
TCAAGCTATGAAAGAGTAAGGTACGGTTGGAGGCAATTTCAATTAAGGAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATCATGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCACAAAATCGCTATTGATGCTAGCAT
GAGTATTTATCAATTTATTATTGTTGTGGGTAGAAGTGGGACTGAGATGCTCACCAATCAAACAGATTGTTGGTCTGCGTTGGTGTGTGGTTTGAAAACAGGGAGTCGAA
ATGTCGTTTCAAGAAGATTCGAAAGCCTCCATATTTCAACCGAATCATTCCATTATAGCCTTACACTAGAAGGAAGAGAACTAAGCAAGAGGTATGTGAGATTTATCAAT
TCAAGCTATGAAAGAGTAAGGTACGGTTGGAGGCAATTTCAATTAAGGAGCTAA
Protein sequenceShow/hide protein sequence
MGIMGLTKLLADNAPKGMKEQKFETYFGHKIAIDASMSIYQFIIVVGRSGTEMLTNQTDCWSALVCGLKTGSRNVVSRRFESLHISTESFHYSLTLEGRELSKRYVRFIN
SSYERVRYGWRQFQLRS