CuGenDBv2

Gene ID	PI0009472
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	F-box protein SKIP24 isoform X2
Genome location	chr01:17879876..17881397
RNA-Seq Expression	PI0009472
Synteny	PI0009472
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0005886 - plasma membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043654.1 F-box protein SKIP24 isoform X1 [Cucumis melo var. makuwa]

3.3e-58

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Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL
        +LER+RYRKKAAHTRAV RKESQIAEHYR+VGQLEERL+EET+K TTTLTELSN                N+  PEVIRARQK+IVEQCSVSVDSRL+TL
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL

Query:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINVRFL
        DMELKLCKQQIAIF+KAL            KDEKKRL+LAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAINVRF+
Subjt:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINVRFL

TYK09707.1 F-box protein SKIP24 isoform X2 [Cucumis melo var. makuwa]

8.6e-59

77.14

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Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN-----------NLRIPEVIRARQKKIVEQCSVSVDSRLQTLDMELK
        +LER+RYRKKAAHTRAV RKESQIAEHYR+VGQLEERL+EET+K TTTLTELSN           N+  PEVIRARQK+IVEQCSVSVDSRL+TLDMELK
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN-----------NLRIPEVIRARQKKIVEQCSVSVDSRLQTLDMELK

Query:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINVRFL
        LCKQQIAIF+KAL            KDEKKRL+LAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAINVRF+
Subjt:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINVRFL

XP_008455770.1 PREDICTED: F-box protein SKIP24 isoform X3 [Cucumis melo]

3.1e-56

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Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL
        +LER+RYRKKAAHTRAV RKESQIAEHYR+VGQLEERL+EET+K TTTLTELSN                N+  PEVIRARQK+IVEQCSVSVDSRL+TL
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL

Query:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN
        DMELKLCKQQIAIF+KAL            KDEKKRL+LAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAIN
Subjt:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN

XP_016901822.1 PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo]

3.1e-56

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Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL
        +LER+RYRKKAAHTRAV RKESQIAEHYR+VGQLEERL+EET+K TTTLTELSN                N+  PEVIRARQK+IVEQCSVSVDSRL+TL
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL

Query:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN
        DMELKLCKQQIAIF+KAL            KDEKKRL+LAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAIN
Subjt:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN

XP_016901824.1 PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo]

8.1e-57

77.19

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Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN-----------NLRIPEVIRARQKKIVEQCSVSVDSRLQTLDMELK
        +LER+RYRKKAAHTRAV RKESQIAEHYR+VGQLEERL+EET+K TTTLTELSN           N+  PEVIRARQK+IVEQCSVSVDSRL+TLDMELK
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN-----------NLRIPEVIRARQKKIVEQCSVSVDSRLQTLDMELK

Query:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN
        LCKQQIAIF+KAL            KDEKKRL+LAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAIN
Subjt:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C1S8 F-box protein SKIP24 isoform X3

1.5e-56

Show/hide

Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL
        +LER+RYRKKAAHTRAV RKESQIAEHYR+VGQLEERL+EET+K TTTLTELSN                N+  PEVIRARQK+IVEQCSVSVDSRL+TL
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL

Query:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN
        DMELKLCKQQIAIF+KAL            KDEKKRL+LAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAIN
Subjt:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN

A0A1S4E0Q4 F-box protein SKIP24 isoform X1

1.5e-56

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Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL
        +LER+RYRKKAAHTRAV RKESQIAEHYR+VGQLEERL+EET+K TTTLTELSN                N+  PEVIRARQK+IVEQCSVSVDSRL+TL
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL

Query:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN
        DMELKLCKQQIAIF+KAL            KDEKKRL+LAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAIN
Subjt:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN

A0A1S4E0S8 F-box protein SKIP24 isoform X2

3.9e-57

77.19

Show/hide

Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN-----------NLRIPEVIRARQKKIVEQCSVSVDSRLQTLDMELK
        +LER+RYRKKAAHTRAV RKESQIAEHYR+VGQLEERL+EET+K TTTLTELSN           N+  PEVIRARQK+IVEQCSVSVDSRL+TLDMELK
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN-----------NLRIPEVIRARQKKIVEQCSVSVDSRLQTLDMELK

Query:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN
        LCKQQIAIF+KAL            KDEKKRL+LAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAIN
Subjt:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAIN

A0A5A7TK06 F-box protein SKIP24 isoform X1

1.6e-58

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Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL
        +LER+RYRKKAAHTRAV RKESQIAEHYR+VGQLEERL+EET+K TTTLTELSN                N+  PEVIRARQK+IVEQCSVSVDSRL+TL
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN----------------NLRIPEVIRARQKKIVEQCSVSVDSRLQTL

Query:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINVRFL
        DMELKLCKQQIAIF+KAL            KDEKKRL+LAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAINVRF+
Subjt:  DMELKLCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINVRFL

A0A5D3CCI3 F-box protein SKIP24 isoform X2

4.2e-59

77.14

Show/hide

Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN-----------NLRIPEVIRARQKKIVEQCSVSVDSRLQTLDMELK
        +LER+RYRKKAAHTRAV RKESQIAEHYR+VGQLEERL+EET+K TTTLTELSN           N+  PEVIRARQK+IVEQCSVSVDSRL+TLDMELK
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSN-----------NLRIPEVIRARQKKIVEQCSVSVDSRLQTLDMELK

Query:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINVRFL
        LCKQQIAIF+KAL            KDEKKRL+LAKEELTSLKYHPLKDHKSM+SSNNDSHIKR+SKDAINVRF+
Subjt:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINVRFL

SwissProt top hits

e value

%identity

Alignment

Q9CAZ0 F-box protein SKIP24

8.8e-22

40.12

Show/hide

Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSNNLRI-----------PEVIRARQKKIVEQCSVSVDSRLQTLDMELK
        + ER + RK AAH RA+ RKES+I+E  R++ +LE RL +E  +  ++  + S+ L++           PEV+R RQK++VEQ +V V+ RL+ L+ME+K
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSNNLRI-----------PEVIRARQKKIVEQCSVSVDSRLQTLDMELK

Query:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIK-RKSKDAIN
        LCKQQI    +AL            ++ K R  +A +EL S+KYHPL+D+KS+ + +  S+ K +K K +IN
Subjt:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIK-RKSKDAIN

Arabidopsis top hits

e value

%identity

Alignment

AT1G08710.1 F-box family protein

6.2e-23

40.12

Show/hide

Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSNNLRI-----------PEVIRARQKKIVEQCSVSVDSRLQTLDMELK
        + ER + RK AAH RA+ RKES+I+E  R++ +LE RL +E  +  ++  + S+ L++           PEV+R RQK++VEQ +V V+ RL+ L+ME+K
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSNNLRI-----------PEVIRARQKKIVEQCSVSVDSRLQTLDMELK

Query:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIK-RKSKDAIN
        LCKQQI    +AL            ++ K R  +A +EL S+KYHPL+D+KS+ + +  S+ K +K K +IN
Subjt:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIK-RKSKDAIN

AT1G08710.2 F-box family protein

6.2e-23

40.12

Show/hide

Query:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSNNLRI-----------PEVIRARQKKIVEQCSVSVDSRLQTLDMELK
        + ER + RK AAH RA+ RKES+I+E  R++ +LE RL +E  +  ++  + S+ L++           PEV+R RQK++VEQ +V V+ RL+ L+ME+K
Subjt:  KLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSNNLRI-----------PEVIRARQKKIVEQCSVSVDSRLQTLDMELK

Query:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIK-RKSKDAIN
        LCKQQI    +AL            ++ K R  +A +EL S+KYHPL+D+KS+ + +  S+ K +K K +IN
Subjt:  LCKQQIAIFRKALISFECGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIK-RKSKDAIN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGTCATCGAAAGTTGGAGAGAAATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTTTTAGAAAGGAAAGCCAAATAGCTGAGCATTATAGGAAGGTTGGTCA
ATTAGAGGAACGATTGATGGAGGAGACCAACAAATGGACAACGACCTTGACGGAATTGTCTAATAATTTACGCATACCTGAGGTCATTAGGGCAAGGCAAAAGAAAATTG
TTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCAGACTCTAGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCGAAAAGCACTTATAAGTTTTGAA
TGTGGAAACATTATTTTTCTCTCTAAAGATGAAAAAAAGAGATTGAAATTAGCTAAAGAAGAGTTAACTTCATTGAAGTATCATCCTCTAAAGGATCATAAATCTATGGA
TAGCAGTAATAATGATTCTCACATCAAGAGGAAGTCAAAGGATGCAATAAATGTAAGGTTCTTGCTTGTTGATTATGCTTCAAATTTTTTTATTGTGAATTTTGATAATT
TTGTCATGTTGATGATGGTTTGGTTGCTATGA

mRNA sequence

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Protein sequence

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MCHRKLERNRYRKKAAHTRAVFRKESQIAEHYRKVGQLEERLMEETNKWTTTLTELSNNLRIPEVIRARQKKIVEQCSVSVDSRLQTLDMELKLCKQQIAIFRKALISFE
CGNIIFLSKDEKKRLKLAKEELTSLKYHPLKDHKSMDSSNNDSHIKRKSKDAINVRFLLVDYASNFFIVNFDNFVMLMMVWLL

PI0009472 (gene) of Melon (PI 482460) v1 genome