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PI0009504 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009504
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:21799826..21801195
RNA-Seq ExpressionPI0009504
SyntenyPI0009504
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041664.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-2039.9Show/hide
Query:  DKRPKLTKEVNVI----VGGMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGN
        DK PK+ ++VN++    + GM+LEDI+K LA N+L+ QQE K                      Q++Q  TA+ K++GKGKL  QPDYANVS ISLRSG 
Subjt:  DKRPKLTKEVNVI----VGGMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGN

Query:  TL--IYTLENQLLKSTLPLKL----------INP--------------------------RLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY
         +    T E ++    LPL            INP                           LAPKKK   K++ELLE+F+KVQINLPLL+AIQQ+  Y
Subjt:  TL--IYTLENQLLKSTLPLKL----------INP--------------------------RLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY

KAA0046065.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-1739.49Show/hide
Query:  DKRPKLTKEVNVIVG-GMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGNTL-
        DK P+ T+  +     G +LEDI+K LA N+L+ QQE K                      Q++QL TA+ K++GKGKL  QP++ANVS+ISLRSG  L 
Subjt:  DKRPKLTKEVNVIVG-GMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGNTL-

Query:  -IYTLENQLLKSTLPLKLIN------------------------------------PRLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY
           T E ++    LPL   N                                     RLAPKKK   K++ELLE+FKKVQINLPLL AIQQI  Y
Subjt:  -IYTLENQLLKSTLPLKLIN------------------------------------PRLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY

KAA0062079.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-1969.77Show/hide
Query:  GMSLEDIVKTLANNSLNLQQET-------KVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRS
        GMSLED VKTLA NSLN Q ET       KVFQQ  K FQQE R  FVN GNQI+QLAT V KLEGKGKL  QPDY+N+S+ISLRS
Subjt:  GMSLEDIVKTLANNSLNLQQET-------KVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRS

KAA0066512.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-1938.89Show/hide
Query:  DKRPKLTKEVNVI----VGGMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGN
        DK P++ ++VN++      G +LEDI+K LA N+L+ QQE K                      Q++QL TA+ K++GKGKLS QPD+ANVS+ISLRSG 
Subjt:  DKRPKLTKEVNVI----VGGMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGN

Query:  TL--IYTLENQLLKSTLPLKLIN------------------------------------PRLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY
         L    T E ++    LPL   N                                     RLAPKKK   K++ELLE+F+KVQIN PLL AIQQ+  Y
Subjt:  TL--IYTLENQLLKSTLPLKLIN------------------------------------PRLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY

TYK04941.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-1868.24Show/hide
Query:  MSLEDIVKTLANNSLNLQQET-------KVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRS
        MSLED VKTLANNSLN Q ET       KVFQQ  K FQQ+ R  FVN GNQI+QLAT V KLEGKGKL  QPDY+N+S+ISL+S
Subjt:  MSLEDIVKTLANNSLNLQQET-------KVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRS

TrEMBL top hitse value%identityAlignment
A0A5A7TE06 Retrotransposon gag protein8.0e-2139.9Show/hide
Query:  DKRPKLTKEVNVI----VGGMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGN
        DK PK+ ++VN++    + GM+LEDI+K LA N+L+ QQE K                      Q++Q  TA+ K++GKGKL  QPDYANVS ISLRSG 
Subjt:  DKRPKLTKEVNVI----VGGMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGN

Query:  TL--IYTLENQLLKSTLPLKL----------INP--------------------------RLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY
         +    T E ++    LPL            INP                           LAPKKK   K++ELLE+F+KVQINLPLL+AIQQ+  Y
Subjt:  TL--IYTLENQLLKSTLPLKL----------INP--------------------------RLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY

A0A5A7TXC8 Retrotransposon gag protein8.3e-1839.49Show/hide
Query:  DKRPKLTKEVNVIVG-GMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGNTL-
        DK P+ T+  +     G +LEDI+K LA N+L+ QQE K                      Q++QL TA+ K++GKGKL  QP++ANVS+ISLRSG  L 
Subjt:  DKRPKLTKEVNVIVG-GMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGNTL-

Query:  -IYTLENQLLKSTLPLKLIN------------------------------------PRLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY
           T E ++    LPL   N                                     RLAPKKK   K++ELLE+FKKVQINLPLL AIQQI  Y
Subjt:  -IYTLENQLLKSTLPLKLIN------------------------------------PRLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY

A0A5A7V8R3 Retrotransposon gag protein1.5e-1969.77Show/hide
Query:  GMSLEDIVKTLANNSLNLQQET-------KVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRS
        GMSLED VKTLA NSLN Q ET       KVFQQ  K FQQE R  FVN GNQI+QLAT V KLEGKGKL  QPDY+N+S+ISLRS
Subjt:  GMSLEDIVKTLANNSLNLQQET-------KVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRS

A0A5D3BZ22 Retrotransposon gag protein1.3e-1868.24Show/hide
Query:  MSLEDIVKTLANNSLNLQQET-------KVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRS
        MSLED VKTLANNSLN Q ET       KVFQQ  K FQQ+ R  FVN GNQI+QLAT V KLEGKGKL  QPDY+N+S+ISL+S
Subjt:  MSLEDIVKTLANNSLNLQQET-------KVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRS

A0A5D3C4I5 Retrotransposon gag protein8.8e-2038.89Show/hide
Query:  DKRPKLTKEVNVI----VGGMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGN
        DK P++ ++VN++      G +LEDI+K LA N+L+ QQE K                      Q++QL TA+ K++GKGKLS QPD+ANVS+ISLRSG 
Subjt:  DKRPKLTKEVNVI----VGGMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGN

Query:  TL--IYTLENQLLKSTLPLKLIN------------------------------------PRLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY
         L    T E ++    LPL   N                                     RLAPKKK   K++ELLE+F+KVQIN PLL AIQQ+  Y
Subjt:  TL--IYTLENQLLKSTLPLKLIN------------------------------------PRLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTATGATATCAGGTACCAAATCGATAAACGTCCCAAGCTCACGAAGGAGGTAAACGTCATCGTAGGAGGTATGTCTTTAGAGGATATTGTTAAAACTTTAGCAAA
TAACTCTCTTAATTTACAACAAGAAACAAAAGTATTTCAACAACAGATGAAAGTATTCCAACAAGAGGCTAGGGTTGGATTCGTGAACATGGGAAACCAAATCTCCCAAT
TGGCCACAGCGGTAGGCAAGCTCGAAGGTAAAGGAAAACTATCCGTTCAACCCGATTATGCCAATGTAAGTTCAATCTCTTTGAGAAGTGGAAACACTTTAATTTATACT
TTAGAGAACCAATTGTTAAAGTCAACGCTCCCTCTCAAGTTGATCAACCCAAGGTTGGCACCAAAGAAGAAAATGGCATGTAAAGACAAGGAGCTTTTGGAGGTGTTCAA
GAAAGTTCAAATTAATTTGCCCCTCCTTAGTGCAATACAACAAATCTCGAGTTACCATTTTCATTTAATAGTTTACAAAAAACAAAATAAACCCTTTTCCTTTTCTTCTC
CATTCTCTCAAATCGACACAACCCACCCCTCCTCTCCATTAAAGTGCACAAAAAACCCAATCGACGACAACCCTCGGCGACTCACTGTTCGTGAACCACGACTTCAGCAA
GGTTCGAACGGCTCCACGATTTATGTCACACCCCCTCTCAGATCACCTACTCTCGACCCGAGAGACAACGTGAAGTCAACCGATATCTTTCTCCTCTCAACGATACGAGC
TGACCTTAACCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGGTATGATATCAGGTACCAAATCGATAAACGTCCCAAGCTCACGAAGGAGGTAAACGTCATCGTAGGAGGTATGTCTTTAGAGGATATTGTTAAAACTTTAGCAAA
TAACTCTCTTAATTTACAACAAGAAACAAAAGTATTTCAACAACAGATGAAAGTATTCCAACAAGAGGCTAGGGTTGGATTCGTGAACATGGGAAACCAAATCTCCCAAT
TGGCCACAGCGGTAGGCAAGCTCGAAGGTAAAGGAAAACTATCCGTTCAACCCGATTATGCCAATGTAAGTTCAATCTCTTTGAGAAGTGGAAACACTTTAATTTATACT
TTAGAGAACCAATTGTTAAAGTCAACGCTCCCTCTCAAGTTGATCAACCCAAGGTTGGCACCAAAGAAGAAAATGGCATGTAAAGACAAGGAGCTTTTGGAGGTGTTCAA
GAAAGTTCAAATTAATTTGCCCCTCCTTAGTGCAATACAACAAATCTCGAGTTACCATTTTCATTTAATAGTTTACAAAAAACAAAATAAACCCTTTTCCTTTTCTTCTC
CATTCTCTCAAATCGACACAACCCACCCCTCCTCTCCATTAAAGTGCACAAAAAACCCAATCGACGACAACCCTCGGCGACTCACTGTTCGTGAACCACGACTTCAGCAA
GGTTCGAACGGCTCCACGATTTATGTCACACCCCCTCTCAGATCACCTACTCTCGACCCGAGAGACAACGTGAAGTCAACCGATATCTTTCTCCTCTCAACGATACGAGC
TGACCTTAACCTCTAA
Protein sequenceShow/hide protein sequence
MRYDIRYQIDKRPKLTKEVNVIVGGMSLEDIVKTLANNSLNLQQETKVFQQQMKVFQQEARVGFVNMGNQISQLATAVGKLEGKGKLSVQPDYANVSSISLRSGNTLIYT
LENQLLKSTLPLKLINPRLAPKKKMACKDKELLEVFKKVQINLPLLSAIQQISSYHFHLIVYKKQNKPFSFSSPFSQIDTTHPSSPLKCTKNPIDDNPRRLTVREPRLQQ
GSNGSTIYVTPPLRSPTLDPRDNVKSTDIFLLSTIRADLNL