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PI0009561 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009561
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr10:3696222..3697340
RNA-Seq ExpressionPI0009561
SyntenyPI0009561
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041279.1 gag/pol protein [Cucumis melo var. makuwa]9.3e-4174.79Show/hide
Query:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECP    +NASQ+V+DAYD W KAN++AR+YILASMSD+LSKKHE MVTARQIMDSL+EMFGQ SIQI  EAIKY+YNARMKEGQSVREHVL+M+V F
Subjt:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQRSFL
        NVA+ NG V DE+SQ S++
Subjt:  NVAETNGVVIDEQSQRSFL
KAA0056413.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-4073.11Show/hide
Query:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECP    +NASQ+V+DAYDRWTKAN+KA +YILASMSD+LSKKHE MVTARQI DSL+EMFGQ SIQI  EAIKYVYNARMK+GQSV+EH+L+M+V F
Subjt:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQRSFL
        NV + NG V DE+SQ S++
Subjt:  NVAETNGVVIDEQSQRSFL
KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-4073.95Show/hide
Query:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECP    +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQ SIQI  EAIKYVYNARMKEGQSVREHVL M+V F
Subjt:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQRSFL
        NVAE N  + DE+SQ S++
Subjt:  NVAETNGVVIDEQSQRSFL
TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-4073.95Show/hide
Query:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECP    +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQ SIQI  EAIKYVYNARMKEGQSVREHVL M+V F
Subjt:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQRSFL
        NVAE N  + DE+SQ S++
Subjt:  NVAETNGVVIDEQSQRSFL
TYK21841.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-4276.47Show/hide
Query:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        M+ECP    +NASQ+V+D YDRWTKAN+KARVYILASMSD+LSKKHE MVTA QIMDSL+EMFGQ SIQI  +AIKYVYNA MKEGQSVR+HV+DM+V F
Subjt:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQRSFL
        NVAE NGVV DE+SQ SF+
Subjt:  NVAETNGVVIDEQSQRSFL
TrEMBL top hitse value%identityAlignment
A0A5A7TIU9 Gag/pol protein4.5e-4174.79Show/hide
Query:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECP    +NASQ+V+DAYD W KAN++AR+YILASMSD+LSKKHE MVTARQIMDSL+EMFGQ SIQI  EAIKY+YNARMKEGQSVREHVL+M+V F
Subjt:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQRSFL
        NVA+ NG V DE+SQ S++
Subjt:  NVAETNGVVIDEQSQRSFL
A0A5A7VA67 Gag/pol protein1.7e-4073.95Show/hide
Query:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECP    +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQ SIQI  EAIKYVYNARMKEGQSVREHVL M+V F
Subjt:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQRSFL
        NVAE N  + DE+SQ S++
Subjt:  NVAETNGVVIDEQSQRSFL
A0A5D3D0D9 Gag/pol protein1.7e-4073.95Show/hide
Query:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECP    +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQ SIQI  EAIKYVYNARMKEGQSVREHVL M+V F
Subjt:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQRSFL
        NVAE N  + DE+SQ S++
Subjt:  NVAETNGVVIDEQSQRSFL
A0A5D3DDU7 Gag/pol protein1.4e-4276.47Show/hide
Query:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        M+ECP    +NASQ+V+D YDRWTKAN+KARVYILASMSD+LSKKHE MVTA QIMDSL+EMFGQ SIQI  +AIKYVYNA MKEGQSVR+HV+DM+V F
Subjt:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQRSFL
        NVAE NGVV DE+SQ SF+
Subjt:  NVAETNGVVIDEQSQRSFL
A0A5D3DZL3 Gag/pol protein1.7e-4073.11Show/hide
Query:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECP    +NASQ+V+DAYDRWTKAN+KA +YILASMSD+LSKKHE MVTARQI DSL+EMFGQ SIQI  EAIKYVYNARMK+GQSV+EH+L+M+V F
Subjt:  MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGVVIDEQSQRSFL
        NV + NG V DE+SQ S++
Subjt:  NVAETNGVVIDEQSQRSFL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAATGTCCTCTTTCCTCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCTGGCACGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGTGGTCATT
GACGAGCAAAGTCAGCGTTCATTTCTAAGAATGGTGTACACATTTGTTCAGCTAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAATGTCCTCTTTCCTCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCTGGCACGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGTGGTCATT
GACGAGCAAAGTCAGCGTTCATTTCTAAGAATGGTGTACACATTTGTTCAGCTAAGTTAG
Protein sequenceShow/hide protein sequence
MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVI
DEQSQRSFLRMVYTFVQLS