CuGenDBv2

Gene ID	PI0009570
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	chr12:10183880..10186012
RNA-Seq Expression	PI0009570
Synteny	PI0009570
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043201.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

6.2e-110

42.17

Show/hide

Query:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN
        MQFLAS RI+R HGFLQKLCS Q GSSVSASIAFFSSTHFDSISSP HDF      SSSSLQSPVQK CSLVLE YLRQPHLRFSPSKLNLDMDADSLT+
Subjt:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN

Query:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
        EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERA+EVVECMV VFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
Subjt:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV

Query:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------
        AA MGLVEYAGNVFDEMSAR                                                                                
Subjt:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
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Query:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD
            DKGLSPCEVTRV+L YEYCKTED ASAMVILERLNKK WIRTV TLIRKLCCEKKVALAALF HKLLDKEVNVDRVTLAAFITAC+ESNKYALVSD
Subjt:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD

Query:  LSERISKGI
        LSERISKG+
Subjt:  LSERISKGI

XP_004145475.3 pentatricopeptide repeat-containing protein At4g19890 [Cucumis sativus]

1.8e-112

42.39

Show/hide

Query:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN
        MQFLASLRI+RPHGFLQKLCSFQQGSS SAS+AFFSSTHFDSISSP HDF     SSSSSLQSP++KICSLVL+TYLRQPHLRFSPSKLNLDMDA SLT+
Subjt:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN

Query:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
        EQAISAVA LASEEGSMVALSFFYWA+GFPKFRYFMRLYIVCTMSL+GKCNLERA+EVVECMV VFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
Subjt:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV

Query:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------
        AAEM LVEYAGNVFDEMSAR                                                                                
Subjt:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD
            DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKK WIRTV TLIRKLCCEKKVALAALF HKLLDKEVNVDRVTLAAF TAC ESNKYALVSD
Subjt:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD

Query:  LSERISKGIG
        LSERISKGIG
Subjt:  LSERISKGIG

XP_008459042.1 PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Cucumis melo]

7.4e-111

42.39

Show/hide

Query:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN
        MQFLAS RI+R HGFLQKLCS Q GSSVSASIAFFSSTHFDSISSP HDF      SSSSLQSPVQK CSLVLE YLRQPHLRFSPSKLNLDMDADSLT+
Subjt:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN

Query:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
        EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERA+EVVECMV VFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
Subjt:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV

Query:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------
        AA MGLVEYAGNVFDEMSAR                                                                                
Subjt:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD
            DKGLSPCEVTRV+L YEYCKTED ASAMVILERLNKK WIRTV TLIRKLCCEKKVALAALF HKLLDKEVNVDRVTLAAFITAC+ESNKYALVSD
Subjt:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD

Query:  LSERISKGIG
        LSERISKGIG
Subjt:  LSERISKGIG

XP_038895547.1 pentatricopeptide repeat-containing protein At4g19890 isoform X2 [Benincasa hispida]

7.6e-100

39.75

Show/hide

Query:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN
        MQFLASLRI+RPHGFLQKLC FQQ SSVSAS+ FFSSTH  SISS  +D     SSSSSSLQSPVQ ICSLVL+TY RQPHLRFSPSKLNLDMDADSLT+
Subjt:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN

Query:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
        EQAIS VASLASEEGSMVALSFFYWAIGFPKFR+FMRLYIVCTMSLIGKCNLERA EVVECMV  FAEIGKLKEAVDMI DMRNQGLVLTTRVMNR I+V
Subjt:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV

Query:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------
        AAEMGL+EYAGNVFDEMSAR                                                                                
Subjt:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD
            DKGLSPCEVTRVTL YEYCK EDFASAMVILE+L+KK WI TV TLIRKLCCEKKVA+AALF HKLLDK+V+VD VTLAAFITAC ESNKYALVSD
Subjt:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD

Query:  LSERISK
        LSERIS+
Subjt:  LSERISK

XP_038895548.1 pentatricopeptide repeat-containing protein At4g19890 isoform X3 [Benincasa hispida]

1.1e-101

Show/hide

Query:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN
        MQFLASLRI+RPHGFLQKLC FQQ SSVSAS+ FFSSTH  SISS  +D     SSSSSSLQSPVQ ICSLVL+TY RQPHLRFSPSKLNLDMDADSLT+
Subjt:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN

Query:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
        EQAIS VASLASEEGSMVALSFFYWAIGFPKFR+FMRLYIVCTMSLIGKCNLERA EVVECMV  FAEIGKLKEAVDMI DMRNQGLVLTTRVMNR I+V
Subjt:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV

Query:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------
        AAEMGL+EYAGNVFDEMSAR                                                                                
Subjt:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD
            DKGLSPCEVTRVTL YEYCK EDFASAMVILE+L+KK WI TV TLIRKLCCEKKVA+AALF HKLLDK+V+VD VTLAAFITAC ESNKYALVSD
Subjt:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD

Query:  LSERISKGIG
        LSERIS+GIG
Subjt:  LSERISKGIG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYL9 Uncharacterized protein

8.5e-113

42.39

Show/hide

Query:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN
        MQFLASLRI+RPHGFLQKLCSFQQGSS SAS+AFFSSTHFDSISSP HDF     SSSSSLQSP++KICSLVL+TYLRQPHLRFSPSKLNLDMDA SLT+
Subjt:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN

Query:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
        EQAISAVA LASEEGSMVALSFFYWA+GFPKFRYFMRLYIVCTMSL+GKCNLERA+EVVECMV VFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
Subjt:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV

Query:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------
        AAEM LVEYAGNVFDEMSAR                                                                                
Subjt:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD
            DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKK WIRTV TLIRKLCCEKKVALAALF HKLLDKEVNVDRVTLAAF TAC ESNKYALVSD
Subjt:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD

Query:  LSERISKGIG
        LSERISKGIG
Subjt:  LSERISKGIG

A0A1S3CAH0 pentatricopeptide repeat-containing protein At4g19890

3.6e-111

42.39

Show/hide

Query:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN
        MQFLAS RI+R HGFLQKLCS Q GSSVSASIAFFSSTHFDSISSP HDF      SSSSLQSPVQK CSLVLE YLRQPHLRFSPSKLNLDMDADSLT+
Subjt:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN

Query:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
        EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERA+EVVECMV VFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
Subjt:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV

Query:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------
        AA MGLVEYAGNVFDEMSAR                                                                                
Subjt:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD
            DKGLSPCEVTRV+L YEYCKTED ASAMVILERLNKK WIRTV TLIRKLCCEKKVALAALF HKLLDKEVNVDRVTLAAFITAC+ESNKYALVSD
Subjt:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD

Query:  LSERISKGIG
        LSERISKGIG
Subjt:  LSERISKGIG

A0A5A7TNN8 Pentatricopeptide repeat-containing protein

3.0e-110

42.17

Show/hide

Query:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN
        MQFLAS RI+R HGFLQKLCS Q GSSVSASIAFFSSTHFDSISSP HDF      SSSSLQSPVQK CSLVLE YLRQPHLRFSPSKLNLDMDADSLT+
Subjt:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN

Query:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
        EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERA+EVVECMV VFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
Subjt:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV

Query:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------
        AA MGLVEYAGNVFDEMSAR                                                                                
Subjt:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD
            DKGLSPCEVTRV+L YEYCKTED ASAMVILERLNKK WIRTV TLIRKLCCEKKVALAALF HKLLDKEVNVDRVTLAAFITAC+ESNKYALVSD
Subjt:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD

Query:  LSERISKGI
        LSERISKG+
Subjt:  LSERISKGI

A0A6J1GR66 pentatricopeptide repeat-containing protein At4g19890

5.5e-96

38.73

Show/hide

Query:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN
        MQFLAS+RI+R HGFL K  SF Q  SVSAS   FSS+HFDSISSP  D SSSSSSSSSSLQSPVQ ICSLV+E+Y RQPHLRFSP KLNLDMDAD LT+
Subjt:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN

Query:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
        EQAIS VASLASEEGSM+ALSFFYWAIGFPKFRYFMRLYIVCTM L+GKC  ERA+EVVECM+ VFAEIGKLKEAVDMI+DMRNQGLVLTTRVMNRII+V
Subjt:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV

Query:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------
        AAEMGL+EYAGN+FDEMSAR                                                                                
Subjt:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD
            D GL+PCEVTRVTL YEYCKTE+FASAMVILERL+KK WIRTV TLIRKLC EKKV +AALF HKLLDKEVNVDRV+LAAF+TAC ESNKYALVSD
Subjt:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD

Query:  LSERISKGIG
        L+ERISKGIG
Subjt:  LSERISKGIG

A0A6J1K602 pentatricopeptide repeat-containing protein At4g19890

3.7e-92

37.75

Show/hide

Query:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN
        MQFLASLRI+R HGFL K  SF Q  SVSAS  FFSS+HFDSISSP  D      SSSSSLQSPVQ ICSLV+E+Y RQPHLRFSP KLNLD+DAD LT+
Subjt:  MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTN

Query:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV
        EQAIS VASLASEEGSM+ALSFFYWAI FPKFRYFMRLYIVCTM L+ KC  ERA+EVVECM+ VFAEIGKLKEAVDMI+DMRNQGLVLTTRVMNRII+V
Subjt:  EQAISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILV

Query:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------
        AAEMGL+EYAGN+FDEMSAR                                                                                
Subjt:  AAEMGLVEYAGNVFDEMSAR--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD
            D GL+PCEVTRVTL YEYCKTE+FASAMVILERL+KK WI TV TLIRKLC EKKV +AALF HKLLDKEVNVDRV+LAAF+TAC ESNKYALVSD
Subjt:  ----DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSD

Query:  LSERISKGIG
        L+ERISKGIG
Subjt:  LSERISKGIG

SwissProt top hits

e value

%identity

Alignment

P0C8Q3 Pentatricopeptide repeat-containing protein At4g19890

2.7e-47

Show/hide

Query:  LASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTNEQA
        + SL + + + FL  L +F+  +S+  S+ FF     D  SS   D S  SS SSS  Q  V+ +CSLV  +YLRQ H+  SP ++NLD DA+SLT+EQA
Subjt:  LASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTNEQA

Query:  ISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAE
        I+ VASLASE GSMVAL FFYWA+GF KFR+FMRLY+V   SL+   NL++A+EV+ CM+  F+EIG+L EAV M++DM+NQGL  ++  MN ++ +A E
Subjt:  ISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAE

Query:  MGLVEYAGNVFDEMSAR
        +GL+EYA NVFDEMS R
Subjt:  MGLVEYAGNVFDEMSAR

P0C8Q3 Pentatricopeptide repeat-containing protein At4g19890

1.9e-37

48.62

Show/hide

Query:  LIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMGLVEYAGNVFDEMSARDKGLSPCEVTRVTLTYEYCKTEDFA
        L+    L    E    M+S + + G +  A+    +M+  G V  +     +I    +  +V+ A  +++ M   D+GLSP EVTRVTL YEYCK  D A
Subjt:  LIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMGLVEYAGNVFDEMSARDKGLSPCEVTRVTLTYEYCKTEDFA

Query:  SAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSDLSERISKGIG
        +AM++LE L+KK WIRTV+TL+RKLC EKKV +AALF  KLL+K+ + DRVTLAAF TACSES K  LV+DL+ERIS+G+G
Subjt:  SAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSDLSERISKGIG

Arabidopsis top hits

e value

%identity

Alignment

AT4G19890.1 Pentatricopeptide repeat (PPR-like) superfamily protein

1.9e-48

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Query:  LASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTNEQA
        + SL + + + FL  L +F+  +S+  S+ FF     D  SS   D S  SS SSS  Q  V+ +CSLV  +YLRQ H+  SP ++NLD DA+SLT+EQA
Subjt:  LASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTNEQA

Query:  ISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAE
        I+ VASLASE GSMVAL FFYWA+GF KFR+FMRLY+V   SL+   NL++A+EV+ CM+  F+EIG+L EAV M++DM+NQGL  ++  MN ++ +A E
Subjt:  ISAVASLASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAE

Query:  MGLVEYAGNVFDEMSAR
        +GL+EYA NVFDEMS R
Subjt:  MGLVEYAGNVFDEMSAR

AT4G19890.1 Pentatricopeptide repeat (PPR-like) superfamily protein

1.4e-38

48.62

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Query:  LIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMGLVEYAGNVFDEMSARDKGLSPCEVTRVTLTYEYCKTEDFA
        L+    L    E    M+S + + G +  A+    +M+  G V  +     +I    +  +V+ A  +++ M   D+GLSP EVTRVTL YEYCK  D A
Subjt:  LIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMGLVEYAGNVFDEMSARDKGLSPCEVTRVTLTYEYCKTEDFA

Query:  SAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSDLSERISKGIG
        +AM++LE L+KK WIRTV+TL+RKLC EKKV +AALF  KLL+K+ + DRVTLAAF TACSES K  LV+DL+ERIS+G+G
Subjt:  SAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSDLSERISKGIG

Sequences

Show/hide sequences

CDS sequence

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ATGCAGTTCTTGGCGTCTCTCCGAATTATAAGGCCCCATGGGTTTCTCCAGAAATTATGTTCCTTTCAACAGGGATCTTCAGTTTCCGCCTCCATCGCATTTTTCTCTTC
AACTCATTTTGATTCCATCTCTTCGCCGCAACATGATTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTTGCAGTCTCCTGTCCAAAAGATTTGTTCATTAGTTCTCG
AGACTTATTTACGTCAACCCCATCTGAGATTCTCTCCATCTAAGCTGAATCTTGATATGGATGCTGACTCCTTGACAAATGAGCAAGCCATTTCTGCCGTTGCTTCGCTT
GCTAGCGAGGAGGGTTCAATGGTCGCGCTGAGTTTCTTTTACTGGGCAATCGGGTTCCCCAAATTCCGGTATTTCATGCGGCTTTACATAGTTTGTACGATGTCATTGAT
TGGGAAATGTAATCTAGAGCGAGCTAATGAAGTTGTGGAGTGTATGGTAAGTGTTTTTGCAGAAATTGGAAAGTTGAAGGAGGCGGTGGATATGATCCTTGACATGAGAA
ATCAGGGACTTGTGTTGACCACCAGAGTAATGAATCGTATTATCTTGGTGGCTGCTGAAATGGGGCTGGTTGAATATGCAGGCAATGTGTTCGACGAAATGTCTGCTAGA
GACAAAGGGCTGTCTCCTTGCGAAGTTACACGGGTGACATTGACTTATGAGTATTGCAAAACAGAAGACTTTGCTTCGGCCATGGTTATCTTGGAACGGCTGAACAAGAA
GCATTGGATACGCACAGTTCAAACGCTAATAAGGAAGCTTTGTTGCGAGAAGAAAGTTGCCTTGGCAGCTCTGTTCTTGCATAAGTTACTGGATAAGGAGGTCAATGTTG
ACCGTGTGACTTTGGCTGCATTCATCACTGCCTGTAGTGAGAGCAATAAGTATGCTCTTGTTTCGGACTTATCCGAGAGAATTTCAAAAGGTATCGGCTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MQFLASLRIIRPHGFLQKLCSFQQGSSVSASIAFFSSTHFDSISSPQHDFSSSSSSSSSSLQSPVQKICSLVLETYLRQPHLRFSPSKLNLDMDADSLTNEQAISAVASL
ASEEGSMVALSFFYWAIGFPKFRYFMRLYIVCTMSLIGKCNLERANEVVECMVSVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMGLVEYAGNVFDEMSAR
DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKHWIRTVQTLIRKLCCEKKVALAALFLHKLLDKEVNVDRVTLAAFITACSESNKYALVSDLSERISKGIG

PI0009570 (gene) of Melon (PI 482460) v1 genome