CuGenDBv2

Gene ID	PI0009618
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Coiled-coil domain-containing protein 12
Genome location	chr12:1898960..1903154
RNA-Seq Expression	PI0009618
Synteny	PI0009618
Gene Ontology terms	GO:0005684 - U2-type spliceosomal complex (cellular component) GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domains	IPR013169 - mRNA splicing factor Cwf18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004137537.1 coiled-coil domain-containing protein 12 [Cucumis sativus]

2.5e-69

94.77

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MATEEDSVEQVAAARKERLKALRAAQELL  SDEKNSGGEDKENGA  D+DETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGD+D+NGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

XP_008437152.1 PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]

8.6e-70

96.08

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MATEEDS EQVAAARKERLKALRAAQELL ASDEKNS GEDKENGA ADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQAAEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

XP_022994277.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima]

7.6e-66

90.2

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERL+ALR AQELL A DEK SGGED+ENG  ADT+ETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGDDDQNG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

2.0e-66

91.5

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERL+ALRAAQELL A DEK SGGEDKENGA ADT+ETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGDDDQN  E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

XP_038894163.1 coiled-coil domain-containing protein 12 [Benincasa hispida]

1.9e-69

94.77

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MATEEDSVEQVAAARKERL+ALRAAQELL ASDEKNSGGEDKENGA AD +ETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEP QLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR08 Uncharacterized protein

1.2e-69

94.77

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MATEEDSVEQVAAARKERLKALRAAQELL  SDEKNSGGEDKENGA  D+DETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGD+D+NGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

A0A1S3ATB1 coiled-coil domain-containing protein 12

4.2e-70

96.08

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MATEEDS EQVAAARKERLKALRAAQELL ASDEKNS GEDKENGA ADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQAAEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

A0A5D3BJ95 Coiled-coil domain-containing protein 12

4.2e-70

96.08

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MATEEDS EQVAAARKERLKALRAAQELL ASDEKNS GEDKENGA ADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQAAEGDDDQNGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

A0A6J1GST8 coiled-coil domain-containing protein 12-like

1.4e-65

90.2

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERL+ALRAAQELL A DEK SGGED+ENGA ADT+E NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGDDDQN  E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X1

3.7e-66

90.2

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERL+ALR AQELL A DEK SGGED+ENG  ADT+ETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGDDDQNG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

SwissProt top hits

e value

%identity

Alignment

Q8R344 Coiled-coil domain-containing protein 12

4.2e-11

36.43

Show/hide

Query:  VEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTTEPPQ--LKEDPFVNI
        +E+ A  RKERLKALR   E     D ++   + K+     +    +  ++ RNYVP D++L+  ++  A PV    K ++ +    P+  ++E    N+
Subjt:  VEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTTEPPQ--LKEDPFVNI

Query:  APKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQ
        AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++
Subjt:  APKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQ

Q8WUD4 Coiled-coil domain-containing protein 12

1.9e-11

36.43

Show/hide

Query:  VEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTTEPPQ--LKEDPFVNI
        +E+ A  RKERLKALR   E     D+++   + K      +  E +  ++ RNYVP D++L++ ++  A PV    K ++ +    P+  ++E    N+
Subjt:  VEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTTEPPQ--LKEDPFVNI

Query:  APKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQ
        AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++
Subjt:  APKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).

8.7e-44

67.57

Show/hide

Query:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QLKEDPF
        MA+E++S+EQ AAARKE LKALRAAQEL           E KE+G +   +E    MKFRNYVP  KELQ+GKLAPP LPKFEDP+   PP  + KEDPF
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QLKEDPF

Query:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGD
        VNIAPKKPNWDLRRDVQKKLDKLERRTQKA+ KLMEEQEK+++ AE D
Subjt:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAAAGCTTCAGATGAGAAGAATTC
TGGAGGAGAGGATAAAGAGAATGGTGCTAATGCAGATACTGATGAAACTAATCTTAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGC
TTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTACTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGATCTT
AGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACACAGAAAGCACTATTTAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACGA
TGACCAAAATGGTGCAGAGTGA

mRNA sequence

Show/hide mRNA sequence

CTGTGCAAGAAAGAAACACTCATTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCTGAAGCAACTTTCGCTAGTACAATTCTCTGAACAAAAGTTCCATTCTTCTCTAGTT
TCTCTATATTTTACGCACAACAGGCAATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTG
TTAAAAGCTTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGTGCTAATGCAGATACTGATGAAACTAATCTTAATATGAAATTTCGGAACTATGTTCCTCA
TGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTACTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCG
CTCCAAAGAAACCAAACTGGGATCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACACAGAAAGCACTATTTAAGCTTATGGAGGAACAAGAAAAG
CAAAAGCAGGCAGCTGAAGGAGACGATGACCAAAATGGTGCAGAGTGATAGTTTGCCACACAATTTATGTGCACAATTTATGTGCTCTCTGATGTTACGGTGACAATAAT
ATTCGACATGCTTGGAGAAAATTGTCATCAAAGGACAATGGCGTTTCTGGCTCGTAGGGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGTTGCAAATCTTTTGATT
TATAGTTTATCTATGGTGGCTCATTGTGTGTTCCTTGACTATTACATCCAATAGAATATCTCATACTGGATAGTGATTTGTAATTTACCTATACTAAAAATAACTTTGTA
TTTCACTTTA

Protein sequence

Show/hide protein sequence

MATEEDSVEQVAAARKERLKALRAAQELLKASDEKNSGGEDKENGANADTDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVNIAPKKPNWDL
RRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDDDQNGAE

PI0009618 (gene) of Melon (PI 482460) v1 genome