CuGenDBv2

Gene ID	PI0009699
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr09:7253362..7254297
RNA-Seq Expression	PI0009699
Synteny	PI0009699
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037745.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.0e-65

77.16

Show/hide

Query:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD
        M S L   KLWRIVTGD+ KP + DK+DDSKF+ERLEEWDSKNH+IITWL NTS PAIHTQFDAF+NAK LW+FLSTRF+SVGLAHYYQL ++L+NLNQ+
Subjt:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD

Query:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV
         GQSVN+YLA LQPIWTQLDQA IS DHLRLIKVLM LRPEYESV  ALLH +P P LDAA+
Subjt:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

KAA0041601.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.0e-65

77.16

Show/hide

Query:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD
        M S L   KLWRIVTGD+ KP + DK+DDSKF+ERLEEWDSKNH+IITWL NTS PAIHTQFDAF+NAK LW+FLSTRF+SVGLAHYYQL ++L+NLNQ+
Subjt:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD

Query:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV
         GQSVN+YLA LQPIWTQLDQA IS DHLRLIKVLM LRPEYESV  ALLH +P P LDAA+
Subjt:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

KAA0054248.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.0e-65

77.78

Show/hide

Query:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD
        M S L   KLWRIVT D+ KP + DK+DDSKF+ERLEEWDSKNH+IITWL NTS PAIHTQFDAFDNAK LWDFLSTRF+SVGLAHYYQL ++L+NLNQ+
Subjt:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD

Query:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV
         GQSVN+YLA LQPIWTQLDQA IS DHLRLIKVLM LRPEYESV  ALLH +P P LDAA+
Subjt:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

TYK19656.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.0e-65

77.16

Show/hide

Query:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD
        M S L   KLWRIVTGD+ KP + DK+DDSKF+ERLEEWDSKNH+IITWL NTS PAIHTQFDAF+NAK LW+FLSTRF+SVGLAHYYQL ++L+NLNQ+
Subjt:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD

Query:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV
         GQSVN+YLA LQPIWTQLDQA IS DHLRLIKVLM LRPEYESV  ALLH +P P LDAA+
Subjt:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

TYK26360.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.0e-65

77.16

Show/hide

Query:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD
        M S L   KLWRIVTGD+ KP + DK+DDSKF+ERLEEWDSKNH+IITWL NTS PAIHTQFDAF+NAK LW+FLSTRF+SVGLAHYYQL ++L+NLNQ+
Subjt:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD

Query:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV
         GQSVN+YLA LQPIWTQLDQA IS DHLRLIKVLM LRPEYESV  ALLH +P P LDAA+
Subjt:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T8F2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-65

77.16

Show/hide

Query:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD
        M S L   KLWRIVTGD+ KP + DK+DDSKF+ERLEEWDSKNH+IITWL NTS PAIHTQFDAF+NAK LW+FLSTRF+SVGLAHYYQL ++L+NLNQ+
Subjt:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD

Query:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV
         GQSVN+YLA LQPIWTQLDQA IS DHLRLIKVLM LRPEYESV  ALLH +P P LDAA+
Subjt:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

A0A5A7UGZ4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-65

77.78

Show/hide

Query:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD
        M S L   KLWRIVT D+ KP + DK+DDSKF+ERLEEWDSKNH+IITWL NTS PAIHTQFDAFDNAK LWDFLSTRF+SVGLAHYYQL ++L+NLNQ+
Subjt:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD

Query:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV
         GQSVN+YLA LQPIWTQLDQA IS DHLRLIKVLM LRPEYESV  ALLH +P P LDAA+
Subjt:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

A0A5A7VIT8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-65

77.16

Show/hide

Query:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD
        M S L   KLWRIVTGD+ KP + DK+DDSKF+ERLEEWDSKNH+IITWL NTS PAIHTQFDAF+NAK LW+FLSTRF+SVGLAHYYQL ++L+NLNQ+
Subjt:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD

Query:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV
         GQSVN+YLA LQPIWTQLDQA IS DHLRLIKVLM LRPEYESV  ALLH +P P LDAA+
Subjt:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

A0A5D3C0D7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-65

77.16

Show/hide

Query:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD
        M S L   KLWRIVTGD+ KP + DK+DDSKF+ERLEEWDSKNH+IITWL NTS PAIHTQFDAF+NAK LW+FLSTRF+SVGLAHYYQL ++L+NLNQ+
Subjt:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD

Query:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV
         GQSVN+YLA LQPIWTQLDQA IS DHLRLIKVLM LRPEYESV  ALLH +P P LDAA+
Subjt:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

A0A5D3D7V8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-65

77.16

Show/hide

Query:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD
        M S L   KLWRIVTGD+ KP + DK+DDSKF+ERLEEWDSKNH+IITWL NTS PAIHTQFDAF+NAK LW+FLSTRF+SVGLAHYYQL ++L+NLNQ+
Subjt:  MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQD

Query:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV
         GQSVN+YLA LQPIWTQLDQA IS DHLRLIKVLM LRPEYESV  ALLH +P P LDAA+
Subjt:  MGQSVNDYLAALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCGTCGCGACTCAACCCAGGAAAATTATGGCGCATCGTCACAGGTGATGTTATTAAACCAAAACAGTCGGACAAAAAGGATGACAGTAAATTTCTAGAACGACTAGA
AGAATGGGACAGTAAAAATCACAAGATTATTACGTGGCTTGGTAACACTTCTACTCCTGCAATTCATACTCAATTTGATGCCTTTGATAATGCTAAAATGTTATGGGATT
TTCTGTCTACACGCTTTCAATCTGTTGGATTAGCTCATTATTATCAATTACAAAGCACCCTTTTAAATCTCAATCAGGATATGGGTCAGTCTGTCAATGATTATTTAGCA
GCTCTTCAGCCTATCTGGACCCAGCTTGATCAAGCTAAAATCAGTGCAGATCACCTGCGTCTTATTAAGGTACTCATGCGGTTACGCCCAGAATATGAATCTGTCTGGGT
TGCTCTTCTTCACTGCAACCCATTTCCTTTATTGGATGCAGCTGTTTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MASRLNPGKLWRIVTGDVIKPKQSDKKDDSKFLERLEEWDSKNHKIITWLGNTSTPAIHTQFDAFDNAKMLWDFLSTRFQSVGLAHYYQLQSTLLNLNQDMGQSVNDYLA
ALQPIWTQLDQAKISADHLRLIKVLMRLRPEYESVWVALLHCNPFPLLDAAV

PI0009699 (gene) of Melon (PI 482460) v1 genome