; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0009716 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0009716
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationtig00003622:44371..47216
RNA-Seq ExpressionPI0009716
SyntenyPI0009716
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016020 - membrane (cellular component)
GO:0032991 - protein-containing complex (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0036094 - small molecule binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000722 - RNA polymerase, alpha subunit
IPR006592 - RNA polymerase, N-terminal
IPR007080 - RNA polymerase Rpb1, domain 1
IPR007641 - RNA polymerase Rpb2, domain 7
IPR042102 - RNA polymerase Rpb1, domain 3 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EFH63122.1 hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp. lyrata]8.7e-19152.9Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSL---ALELNH----------------FLVSEK-------
        MEVWALEGFG+AHILQEMLTYKSDHIRARQEVLGTTIIGG IPKPED PESFRLLVRELRSL    + +NH                 LVS +       
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSL---ALELNH----------------FLVSEK-------

Query:  ----NSGLIGR---------KLNQNEEENFFYDR----------SMKNEKLSSHE--------------------------IELGCPGSDMW--------
            N  ++G          K N+ E++  F +R          +  N ++   E                          I+L CP + +W        
Subjt:  ----NSGLIGR---------KLNQNEEENFFYDR----------SMKNEKLSSHE--------------------------IELGCPGSDMW--------

Query:  ----------------------------------------LAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADL
                                                 A PI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFD FRNREISTGAGAIREQLADL
Subjt:  ----------------------------------------LAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADL

Query:  DLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTL
        DLR+I++ SLVEWK+LGEEGP GNEWEDRK+ RRKDFLVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ + RVIYRNNTL
Subjt:  DLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTL

Query:  IDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD------------------------------------------------
         DLLTTSRSTPGELVMCQEKLVQEAVD L+DNGIRGQPMRDGHNKVYKSFSD                                                
Subjt:  IDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD------------------------------------------------

Query:  ------------------------------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG--------------
                                            EVMQGHPVLLNRAPTLHRLGIQ+FQPIL  GRT  L   +       F G              
Subjt:  ------------------------------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG--------------

Query:  --AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKI-------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLR
          A   +FS+    SP   GDPISVPTQDMLIGLYVLTSG RRGICANRYNP NRKN KNE+I        KEPFFCNSYDAIGAYRQKR N  SPLWLR
Subjt:  --AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKI-------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLR

Query:  WRLDQRVIAEREAPI-----------EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
        W+LDQRVIA RE PI           EIY +YLIV+S+KKE  CIYIRTTVGHIS YREIEEAIQGF +ACSY T
Subjt:  WRLDQRVIAEREAPI-----------EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

QCE13735.1 DNA-directed RNA polymerase subunit beta' [Vigna unguiculata]6.4e-18653.75Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSE-----------KNSGLIGR--------
        MEVWALEGFG+AHILQEMLTYKSDHIRARQEVLG  +         +  ++F  ++   +   L +   LVS             N  ++G         
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSE-----------KNSGLIGR--------

Query:  -KLNQNEEENFFYDR-------------------------------------------------------SMKNEKLSSHEIELGCPGSDMWLA------
         K N+ E++  F +R                                                        + NEKLSSH IELGCPGS M L       
Subjt:  -KLNQNEEENFFYDR-------------------------------------------------------SMKNEKLSSHEIELGCPGSDMWLA------

Query:  ---------WPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGR
                  PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLR+I+DYSLVEWKELGEEGP GNEWEDRKVGR
Subjt:  ---------WPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGR

Query:  RKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNG
        R+DFLVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ + RVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVD L+DNG
Subjt:  RKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNG

Query:  IRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------------------
        IRGQPMRDGHNKVYKSFSD                                                                                 
Subjt:  IRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------------------

Query:  ---EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIG
           EVMQGHPVLLNRAPTLHRLGIQAFQPIL  G    L   +       F G                A   +FS+    SP   GDPISVPTQDMLIG
Subjt:  ---EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIG

Query:  LYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYL
        LYVLTSGNRRGICANRYNP NR+N +N++ID       KEPFFCNSYDAIGAYRQKR N  SPLWLRWRLDQRVI  RE PI           EIYG+YL
Subjt:  LYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYL

Query:  IVKSLKKEILCIYIRTTVGHISLYREIEEAIQG
        IV+S+KKEI+CIY+RTTVGHISLYREIEEAIQG
Subjt:  IVKSLKKEILCIYIRTTVGHISLYREIEEAIQG

XP_027186860.1 LOW QUALITY PROTEIN: uncharacterized protein LOC113784808 [Cicer arietinum]1.5e-19051.59Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEK--------------------------
        MEVWALEGFG+AHILQEMLTYKSDHI+ARQEVLGTTIIGG IPKP D PESFRLLVRELRSLALELNHFLVSEK                          
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEK--------------------------

Query:  -------NSGLIGR---------KLNQNEEENFFYDR------------------------------------SMKNEKLSSHEIELGCPGSDMW-----
               N  ++G          K N+ E++  F +R                                      +  +     I+L CP + +W     
Subjt:  -------NSGLIGR---------KLNQNEEENFFYDR------------------------------------SMKNEKLSSHEIELGCPGSDMW-----

Query:  -------------------------------------------------LAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAG
                                                          A PI KKPTFLRLRGSFEYEIQSWKYSIPLFF TQGFDTFRNREIS+GAG
Subjt:  -------------------------------------------------LAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAG

Query:  AIREQLADLDLRLILDYSLVEWKELGEEGPAG--NEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDR
        AIREQL DLDLR+I+D SL+EWKELGEEG     NEWEDRKVGRRK+FLVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ 
Subjt:  AIREQLADLDLRLILDYSLVEWKELGEEGPAG--NEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDR

Query:  WGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD-------------------------------------
        + RVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVD L+DNGIRGQPMRDGHNKVYKSFSD                                     
Subjt:  WGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD-------------------------------------

Query:  -----------------------------------------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG---
                                                       EVMQGHPVLLNRAPTLHRLGIQAFQPIL  GR   L   +       F G   
Subjt:  -----------------------------------------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG---

Query:  -------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID---------KEPFFCNSYDAIGAYR
                     A   +FS+    SP   GDPISVPTQDMLIGLYVLTSGNRRGICANRYNP N +N +NEKI           EPFFCNSYDAIGAYR
Subjt:  -------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID---------KEPFFCNSYDAIGAYR

Query:  QKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYG
        QKR NF SP WLRWR+DQ +++ RE PI           EIYG+YL+++S+KKEI CIYIRTTVGHIS YREIEEAIQGF RA SYG
Subjt:  QKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYG

YP_009584286.1 RNA polymerase beta' subunit-1 [Aconitum brachypodum]6.6e-19961.31Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNSGLIGRKLNQNEEENFFYDRSMKNE
        MEVWALEGFG+AHILQEMLTYKSDH+RARQEVLGTTIIGG I  PED PESFRLLVRELRSLALELNHFLVSEKN  +       N +E F + R     
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNSGLIGRKLNQNEEENFFYDRSMKNE

Query:  KLSSHEIELGCPGSDMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGP--
                            P+ KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIREQLADLDLRLI D SL+EWKELGEEGP  
Subjt:  KLSSHEIELGCPGSDMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGP--

Query:  AGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKL
        AGNEWEDRK+GRRKDFLVRRMELAKHFIR N+EPE MVLCLLPVLPPELRP              ++ + RVIYRNNTL DLLTTSRSTPGELVMCQEKL
Subjt:  AGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKL

Query:  VQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------
        VQEAVD L+DNGIRGQPMRDGHNKVYKSFSD                                                                     
Subjt:  VQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------

Query:  ---------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGD
                       EVMQGHPVLLNRAPTLHRLGIQAFQPIL  GR   L   +       F G                A   +FS+    SP   GD
Subjt:  ---------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGD

Query:  PISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI------
        PISVPTQDML+GLYVLT GNRRGICANRYNP N +N +NEKID       KEP+FC+SYDA+GAYRQKR N  SPLWLRWRLDQRVIA RE PI      
Subjt:  PISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI------

Query:  -----EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
             EIYG+YLIV+++KKEILCI IRTTVGHIS YREIEEAIQGF RACS  T
Subjt:  -----EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

YP_010127486.1 RNA polymerase beta' subunit [Aconitum flavum]1.9e-19861.16Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNSGLIGRKLNQNEEENFFYDRSMKNE
        MEVWALEGFG+AHILQEMLTYKSDH+RARQEVLGTTIIGG I  PED PESFRLLVRELRSLALELNHFLVSEKN  +       N +E F + R     
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNSGLIGRKLNQNEEENFFYDRSMKNE

Query:  KLSSHEIELGCPGSDMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGP--
                            P+ KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIREQLADLDLRLI D SL+EWKELGEEGP  
Subjt:  KLSSHEIELGCPGSDMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGP--

Query:  AGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKL
        AGNEWEDRK+GRRKDFLVRRMELAKHFIR N+EPE MVLCLLPVLPPELRP              ++ + RVIYRNNTL DLLTTSRSTPGELVMCQEKL
Subjt:  AGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKL

Query:  VQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------
        VQEAVD L+DNGIRGQPMRDGHNKVYKSFSD                                                                     
Subjt:  VQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------

Query:  ---------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGD
                       EVMQGHPVLLNRAPTLHRLGIQAFQPIL  GR   L   +       F G                A   +FS+    SP   GD
Subjt:  ---------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGD

Query:  PISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI------
        PISVPTQDML+GLYVLT GNRRGICANRYNP N +N +N+KID       KEP+FC+SYDA+GAYRQKR N  SPLWLRWRLDQRVIA RE PI      
Subjt:  PISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI------

Query:  -----EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
             EIYG+YLIV+++KKEILCI IRTTVGHIS YREIEEAIQGF RACS  T
Subjt:  -----EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

TrEMBL top hitse value%identityAlignment
A0A3Q7YBU2 Multifunctional fusion protein7.2e-19151.59Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEK--------------------------
        MEVWALEGFG+AHILQEMLTYKSDHI+ARQEVLGTTIIGG IPKP D PESFRLLVRELRSLALELNHFLVSEK                          
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEK--------------------------

Query:  -------NSGLIGR---------KLNQNEEENFFYDR------------------------------------SMKNEKLSSHEIELGCPGSDMW-----
               N  ++G          K N+ E++  F +R                                      +  +     I+L CP + +W     
Subjt:  -------NSGLIGR---------KLNQNEEENFFYDR------------------------------------SMKNEKLSSHEIELGCPGSDMW-----

Query:  -------------------------------------------------LAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAG
                                                          A PI KKPTFLRLRGSFEYEIQSWKYSIPLFF TQGFDTFRNREIS+GAG
Subjt:  -------------------------------------------------LAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAG

Query:  AIREQLADLDLRLILDYSLVEWKELGEEGPAG--NEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDR
        AIREQL DLDLR+I+D SL+EWKELGEEG     NEWEDRKVGRRK+FLVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ 
Subjt:  AIREQLADLDLRLILDYSLVEWKELGEEGPAG--NEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDR

Query:  WGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD-------------------------------------
        + RVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVD L+DNGIRGQPMRDGHNKVYKSFSD                                     
Subjt:  WGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD-------------------------------------

Query:  -----------------------------------------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG---
                                                       EVMQGHPVLLNRAPTLHRLGIQAFQPIL  GR   L   +       F G   
Subjt:  -----------------------------------------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG---

Query:  -------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID---------KEPFFCNSYDAIGAYR
                     A   +FS+    SP   GDPISVPTQDMLIGLYVLTSGNRRGICANRYNP N +N +NEKI           EPFFCNSYDAIGAYR
Subjt:  -------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID---------KEPFFCNSYDAIGAYR

Query:  QKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYG
        QKR NF SP WLRWR+DQ +++ RE PI           EIYG+YL+++S+KKEI CIYIRTTVGHIS YREIEEAIQGF RA SYG
Subjt:  QKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYG

A0A482AWY8 DNA-directed RNA polymerase subunit beta3.2e-19961.31Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNSGLIGRKLNQNEEENFFYDRSMKNE
        MEVWALEGFG+AHILQEMLTYKSDH+RARQEVLGTTIIGG I  PED PESFRLLVRELRSLALELNHFLVSEKN  +       N +E F + R     
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNSGLIGRKLNQNEEENFFYDRSMKNE

Query:  KLSSHEIELGCPGSDMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGP--
                            P+ KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIREQLADLDLRLI D SL+EWKELGEEGP  
Subjt:  KLSSHEIELGCPGSDMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGP--

Query:  AGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKL
        AGNEWEDRK+GRRKDFLVRRMELAKHFIR N+EPE MVLCLLPVLPPELRP              ++ + RVIYRNNTL DLLTTSRSTPGELVMCQEKL
Subjt:  AGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKL

Query:  VQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------
        VQEAVD L+DNGIRGQPMRDGHNKVYKSFSD                                                                     
Subjt:  VQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------

Query:  ---------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGD
                       EVMQGHPVLLNRAPTLHRLGIQAFQPIL  GR   L   +       F G                A   +FS+    SP   GD
Subjt:  ---------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGD

Query:  PISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI------
        PISVPTQDML+GLYVLT GNRRGICANRYNP N +N +NEKID       KEP+FC+SYDA+GAYRQKR N  SPLWLRWRLDQRVIA RE PI      
Subjt:  PISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI------

Query:  -----EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
             EIYG+YLIV+++KKEILCI IRTTVGHIS YREIEEAIQGF RACS  T
Subjt:  -----EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

A0A4D6NNC8 Multifunctional fusion protein3.1e-18653.75Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSE-----------KNSGLIGR--------
        MEVWALEGFG+AHILQEMLTYKSDHIRARQEVLG  +         +  ++F  ++   +   L +   LVS             N  ++G         
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSE-----------KNSGLIGR--------

Query:  -KLNQNEEENFFYDR-------------------------------------------------------SMKNEKLSSHEIELGCPGSDMWLA------
         K N+ E++  F +R                                                        + NEKLSSH IELGCPGS M L       
Subjt:  -KLNQNEEENFFYDR-------------------------------------------------------SMKNEKLSSHEIELGCPGSDMWLA------

Query:  ---------WPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGR
                  PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLR+I+DYSLVEWKELGEEGP GNEWEDRKVGR
Subjt:  ---------WPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGR

Query:  RKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNG
        R+DFLVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ + RVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVD L+DNG
Subjt:  RKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNG

Query:  IRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------------------
        IRGQPMRDGHNKVYKSFSD                                                                                 
Subjt:  IRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------------------

Query:  ---EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIG
           EVMQGHPVLLNRAPTLHRLGIQAFQPIL  G    L   +       F G                A   +FS+    SP   GDPISVPTQDMLIG
Subjt:  ---EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIG

Query:  LYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYL
        LYVLTSGNRRGICANRYNP NR+N +N++ID       KEPFFCNSYDAIGAYRQKR N  SPLWLRWRLDQRVI  RE PI           EIYG+YL
Subjt:  LYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYL

Query:  IVKSLKKEILCIYIRTTVGHISLYREIEEAIQG
        IV+S+KKEI+CIY+RTTVGHISLYREIEEAIQG
Subjt:  IVKSLKKEILCIYIRTTVGHISLYREIEEAIQG

A0A7T1WQB9 RNA polymerase beta' subunit9.3e-19961.16Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNSGLIGRKLNQNEEENFFYDRSMKNE
        MEVWALEGFG+AHILQEMLTYKSDH+RARQEVLGTTIIGG I  PED PESFRLLVRELRSLALELNHFLVSEKN  +       N +E F + R     
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNSGLIGRKLNQNEEENFFYDRSMKNE

Query:  KLSSHEIELGCPGSDMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGP--
                            P+ KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIREQLADLDLRLI D SL+EWKELGEEGP  
Subjt:  KLSSHEIELGCPGSDMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGP--

Query:  AGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKL
        AGNEWEDRK+GRRKDFLVRRMELAKHFIR N+EPE MVLCLLPVLPPELRP              ++ + RVIYRNNTL DLLTTSRSTPGELVMCQEKL
Subjt:  AGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKL

Query:  VQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------
        VQEAVD L+DNGIRGQPMRDGHNKVYKSFSD                                                                     
Subjt:  VQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD---------------------------------------------------------------------

Query:  ---------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGD
                       EVMQGHPVLLNRAPTLHRLGIQAFQPIL  GR   L   +       F G                A   +FS+    SP   GD
Subjt:  ---------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGD

Query:  PISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI------
        PISVPTQDML+GLYVLT GNRRGICANRYNP N +N +N+KID       KEP+FC+SYDA+GAYRQKR N  SPLWLRWRLDQRVIA RE PI      
Subjt:  PISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI------

Query:  -----EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
             EIYG+YLIV+++KKEILCI IRTTVGHIS YREIEEAIQGF RACS  T
Subjt:  -----EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

D7KRC2 Multifunctional fusion protein4.2e-19152.9Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSL---ALELNH----------------FLVSEK-------
        MEVWALEGFG+AHILQEMLTYKSDHIRARQEVLGTTIIGG IPKPED PESFRLLVRELRSL    + +NH                 LVS +       
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSL---ALELNH----------------FLVSEK-------

Query:  ----NSGLIGR---------KLNQNEEENFFYDR----------SMKNEKLSSHE--------------------------IELGCPGSDMW--------
            N  ++G          K N+ E++  F +R          +  N ++   E                          I+L CP + +W        
Subjt:  ----NSGLIGR---------KLNQNEEENFFYDR----------SMKNEKLSSHE--------------------------IELGCPGSDMW--------

Query:  ----------------------------------------LAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADL
                                                 A PI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFD FRNREISTGAGAIREQLADL
Subjt:  ----------------------------------------LAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADL

Query:  DLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTL
        DLR+I++ SLVEWK+LGEEGP GNEWEDRK+ RRKDFLVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ + RVIYRNNTL
Subjt:  DLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTL

Query:  IDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD------------------------------------------------
         DLLTTSRSTPGELVMCQEKLVQEAVD L+DNGIRGQPMRDGHNKVYKSFSD                                                
Subjt:  IDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQPMRDGHNKVYKSFSD------------------------------------------------

Query:  ------------------------------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG--------------
                                            EVMQGHPVLLNRAPTLHRLGIQ+FQPIL  GRT  L   +       F G              
Subjt:  ------------------------------------EVMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG--------------

Query:  --AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKI-------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLR
          A   +FS+    SP   GDPISVPTQDMLIGLYVLTSG RRGICANRYNP NRKN KNE+I        KEPFFCNSYDAIGAYRQKR N  SPLWLR
Subjt:  --AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKI-------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLR

Query:  WRLDQRVIAEREAPI-----------EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
        W+LDQRVIA RE PI           EIY +YLIV+S+KKE  CIYIRTTVGHIS YREIEEAIQGF +ACSY T
Subjt:  WRLDQRVIAEREAPI-----------EIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

SwissProt top hitse value%identityAlignment
B1A926 DNA-directed RNA polymerase subunit beta'4.8e-17663.38Show/hide
Query:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF
        D   A PI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDL++I+DYS +EWKELGEEGP GNEWEDRK+GRRKDF
Subjt:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF

Query:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ
        LVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ + RVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVD L+DNGIRGQ
Subjt:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ

Query:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E
        PMRDGHNKVYKSFSD                                                                                    E
Subjt:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E

Query:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVL
        VMQGHPVLLNRAPTLHRLGIQAFQPIL  GR   L   +       F G                A   +FS+    SP   GDPISVPTQDML+GLYVL
Subjt:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVL

Query:  TSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIVKS
        TSG RRGICANRYNP NRKN +NE+ID       KEPFFCNSYDAIGAYRQKR N  SPLWLRW+LDQRVIA REAPI           EIYG+YLIV+S
Subjt:  TSGNRRGICANRYNPSNRKNQKNEKID-------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIVKS

Query:  LKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
        +KKEILCIYIRTTVGHISLYREIEEAIQGFCRACSY T
Subjt:  LKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

Q0ZJ29 DNA-directed RNA polymerase subunit beta'4.5e-17462.78Show/hide
Query:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF
        D   A PI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQL DLDLR+I+DYSLVEWKELGEEGP GNEWEDRK+GRRKDF
Subjt:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF

Query:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ
        LVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ + RVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVD L+DNGIRGQ
Subjt:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ

Query:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E
        PMRDGHNKVYKSFSD                                                                                    E
Subjt:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E

Query:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVL
        VM+GHPVLLNRAPTLHRLGIQAFQPIL  GR   L   +       F G                A   +FS+    SP   GDPISVPTQDMLIGLYVL
Subjt:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVL

Query:  TSGNRRGICANRYNPSNRKNQKNEKID---------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIV
        TSGNRRGICANRYNP NR+N +NE+ID         KEPFFCNSYDAIGAYR KR N  SPLWLRW+LDQR+IA +EAPI           EIYG+YLIV
Subjt:  TSGNRRGICANRYNPSNRKNQKNEKID---------KEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIV

Query:  KSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
        +S+KKEI CIYIRTTVGHISLYREIEEAIQGFCRACSY T
Subjt:  KSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

Q49L07 DNA-directed RNA polymerase subunit beta'7.7e-17462.41Show/hide
Query:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF
        D   A PIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLR+I+DYSLVEWKELGEE P GNEWEDRK+GRRKDF
Subjt:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF

Query:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ
        LVRRMELAKHF+R NIEPEWMVLCLLPVLPPELRP              ++ + RVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVD L+DNGIRGQ
Subjt:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ

Query:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E
        PMRDGHNKVYKSFSD                                                                                    E
Subjt:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E

Query:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVL
        VMQGHPVLLNRAPTLHRLGIQAFQPIL  GR   L   +       F G                A   +FS+    SP   GDPISVPTQDMLIGLYVL
Subjt:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVL

Query:  TSGNRRGICANRYNPSNRKNQKNEKI---------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIV
        TSGNRRGIC NRYNP NR+N +NE+           KEPFFCNSYDAIGAYRQKR N  SPLWLRWRLDQR+IA RE PI           EIYG+YLIV
Subjt:  TSGNRRGICANRYNPSNRKNQKNEKI---------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIV

Query:  KSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
        +S+KKEI+CIYIRTTVGHISL+REIEEAIQGFCRACS+GT
Subjt:  KSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

Q4VZP2 DNA-directed RNA polymerase subunit beta'1.4e-18366.29Show/hide
Query:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF
        D   A PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLI+DYSLVEWKELGEEGPAGNEWEDRKVGRRKDF
Subjt:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF

Query:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ
        LVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ + RVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVD L+DNGIRGQ
Subjt:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ

Query:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E
        PMRDGHNKVYKSFSD                                                                                    E
Subjt:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E

Query:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYESPVFS--GDPISVPTQDMLIGLYVLT
        VMQGHPVLLNRAPTLHRLGIQAFQPIL  GR   L   +       F G                A   +FS+ + + S  GDPISVPTQDMLIGLYVLT
Subjt:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYESPVFS--GDPISVPTQDMLIGLYVLT

Query:  SGNRRGICANRYNPSNRKNQKNEKI-------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIVKSL
        SGNRRGICANRYNPSNRKN KNEKI        KEPFFCNSYDAIGAYRQKR N  SPLWLRWRLDQRVIA REAPI           EIYGYYLIVKS+
Subjt:  SGNRRGICANRYNPSNRKNQKNEKI-------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIVKSL

Query:  KKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
        KKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  KKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

Q68S15 DNA-directed RNA polymerase subunit beta'2.9e-17362.71Show/hide
Query:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF
        D   A PIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLR+I+D SLVEWKELGE+GP GNEWEDRKVGRRKDF
Subjt:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF

Query:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ
        LVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ + RVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVD L+DNGIRGQ
Subjt:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ

Query:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E
        PMRDGHNKVYKSFSD                                                                                    E
Subjt:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E

Query:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVL
        VMQGHPVLLNRAPTLHRLGIQAFQP+L  GR   L   +       F G                A   +FS+    SP   GDPISVPTQDMLIGLYVL
Subjt:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVL

Query:  TSGNRRGICANRYNPSNRKNQKNEKI---------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIV
        TSGNRRGIC NRYNP NR+N +NE+I          KEPFFCNSYDAIGAYRQKR N  SPLWLRWRLDQRVI+ +EAP+           EIYG YLIV
Subjt:  TSGNRRGICANRYNPSNRKNQKNEKI---------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIV

Query:  KSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYG
        +S+KKEIL IYIRTTVGHISLYREIEEAIQGFC+ACSYG
Subjt:  KSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYG

Arabidopsis top hitse value%identityAlignment
ATCG00180.1 DNA-directed RNA polymerase family protein9.0e-17061.52Show/hide
Query:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF
        D   A PI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFD FRNREISTGAGAIREQLADLDLR+I++ SLVEWK+LGEEGP GNEWEDRK+ RRKDF
Subjt:  DMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDF

Query:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ
        LVRRMELAKHFIR NIEPEWMVLCLLPVLPPELRP              ++ + RVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVD L+DNGIRGQ
Subjt:  LVRRMELAKHFIRRNIEPEWMVLCLLPVLPPELRP--------------SDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQ

Query:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E
        PMRDGHNKVYKSFSD                                                                                    E
Subjt:  PMRDGHNKVYKSFSD------------------------------------------------------------------------------------E

Query:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVL
        VMQGHPVLLNRAPTLHRLGIQ+FQPIL  GRT  L   +       F G                A   +FS+    SP   GDPISVPTQDMLIGLYVL
Subjt:  VMQGHPVLLNRAPTLHRLGIQAFQPILFSGRTCYLFTSI------SFRG----------------AFTYVFSYE---SPVFSGDPISVPTQDMLIGLYVL

Query:  TSGNRRGICANRYNPSNRKNQKNEKI-------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIVKS
        TSG RRGICANRYNP NRKN +NE+I        KEPFFCNSYDAIGAYRQK+ N  SPLWLRW+LDQRVIA RE PI           EIY +YLIV+S
Subjt:  TSGNRRGICANRYNPSNRKNQKNEKI-------DKEPFFCNSYDAIGAYRQKRRNFSSPLWLRWRLDQRVIAEREAPI-----------EIYGYYLIVKS

Query:  LKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT
        +KKE  CIYIRTTVGHIS YREIEEAIQGF +ACSY T
Subjt:  LKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

ATCG00190.1 RNA polymerase subunit beta2.9e-3596Show/hide
Query:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKN
        MEVWALEGFG+AHILQEMLTYKSDHIRARQEVLGTTIIGG IPKPED PESFRLLVRELRSLALELNHFLVSEKN
Subjt:  MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTTTGGGCTCTAGAAGGATTTGGTCTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACGAT
CATTGGAGGAAGAATACCTAAACCTGAGGATACTCCAGAATCTTTTCGATTGCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACTGAATCATTTCCTTGTATCTGAGA
AGAACTCCGGATTAATAGGAAGGAAGCTTAATCAAAATGAAGAAGAAAATTTTTTCTATGATCGATCGATGAAGAATGAGAAACTGTCATCCCATGAAATCGAATTGGGA
TGCCCCGGATCTGACATGTGGCTTGCTTGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCC
ACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTCTAG
ATTATTCGTTAGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCAGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAA
TTAGCTAAGCATTTTATTCGAAGAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGCTGAGACCGTCAGATAGATGGGGAAGAGTTAT
ATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATAGACTGATTG
ATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCCTTTTCCGATGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACT
CTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTATTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTCAGAGGCGCGTTTACTTATGTTTTCTCATA
TGAATCTCCTGTCTTCAGTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGGATTTGTGCAAATCGGT
ATAATCCATCTAATCGCAAAAATCAGAAAAATGAAAAAATTGACAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGAGAAATTTT
TCTAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTGAAAGAGAAGCCCCTATCGAAATTTATGGGTACTATCTAATAGTCAAAAGTCTCAAAAAAGA
AATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTTTGGGCTCTAGAAGGATTTGGTCTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACGAT
CATTGGAGGAAGAATACCTAAACCTGAGGATACTCCAGAATCTTTTCGATTGCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACTGAATCATTTCCTTGTATCTGAGA
AGAACTCCGGATTAATAGGAAGGAAGCTTAATCAAAATGAAGAAGAAAATTTTTTCTATGATCGATCGATGAAGAATGAGAAACTGTCATCCCATGAAATCGAATTGGGA
TGCCCCGGATCTGACATGTGGCTTGCTTGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCC
ACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTCTAG
ATTATTCGTTAGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCAGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAA
TTAGCTAAGCATTTTATTCGAAGAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGCTGAGACCGTCAGATAGATGGGGAAGAGTTAT
ATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATAGACTGATTG
ATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCCTTTTCCGATGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACT
CTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTATTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTCAGAGGCGCGTTTACTTATGTTTTCTCATA
TGAATCTCCTGTCTTCAGTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGGATTTGTGCAAATCGGT
ATAATCCATCTAATCGCAAAAATCAGAAAAATGAAAAAATTGACAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGAGAAATTTT
TCTAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTGAAAGAGAAGCCCCTATCGAAATTTATGGGTACTATCTAATAGTCAAAAGTCTCAAAAAAGA
AATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCGCGTAG
Protein sequenceShow/hide protein sequence
MEVWALEGFGLAHILQEMLTYKSDHIRARQEVLGTTIIGGRIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNSGLIGRKLNQNEEENFFYDRSMKNEKLSSHEIELG
CPGSDMWLAWPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLILDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRME
LAKHFIRRNIEPEWMVLCLLPVLPPELRPSDRWGRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDRLIDNGIRGQPMRDGHNKVYKSFSDEVMQGHPVLLNRAPT
LHRLGIQAFQPILFSGRTCYLFTSISFRGAFTYVFSYESPVFSGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNQKNEKIDKEPFFCNSYDAIGAYRQKRRNF
SSPLWLRWRLDQRVIAEREAPIEIYGYYLIVKSLKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGTA